Factsheet for PGSC0003DMT400008770

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT4G34640.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT4G34640.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT4G34640.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g054130.1.1	Tomato	unclear	93.92	88.53
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	77.13	76.76
KRH24387	Soybean	cytosol	76.89	76.51
VIT_03s0038g00450.t01	Wine grape	cytosol	76.4	76.03
Bra011548.1-P	Field mustard	cytosol	68.13	70.35
CDX75450	Canola	cytosol	68.13	70.35
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	9.0	69.81
CDX76294	Canola	cytosol	67.88	69.75
CDX69075	Canola	cytosol	67.4	69.6
AT4G34640.1	Thale cress	cytosol	69.1	69.27
Bra017667.1-P	Field mustard	cytosol	64.96	68.99
PGSC0003DMT400089434	Potato	cytosol	63.02	67.8
CDX72493	Canola	cytosol	70.07	67.61
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	67.64	67.31
CDX75451	Canola	cytosol	67.64	67.31
CDY17472	Canola	cytosol	69.59	67.14
CDY45322	Canola	cytosol	66.42	67.08
Os03t0805100-01	Rice	cytosol	65.69	67.0
GSMUA_Achr4P17290_001	Banana	cytosol	47.45	66.55
Bra011549.1-P	Field mustard	cytosol	67.15	66.03
EER93257	Sorghum	cytosol	64.72	66.0
Zm00001d013048_P005	Maize	cytosol	63.99	65.59
TraesCS5A01G454500.1	Wheat	cytosol	63.99	65.1
CDX69076	Canola	cytosol, plasma membrane, plastid	67.64	64.95
CDY45323	Canola	cytosol	34.31	64.68
Bra017668.1-P	Field mustard	cytosol	38.2	64.61
TraesCS5B01G464600.1	Wheat	cytosol	63.5	64.6
CDX72494	Canola	cytosol	62.04	64.56
TraesCS5D01G465000.1	Wheat	cytosol	63.02	64.11
Bra034641.1-P	Field mustard	cytosol	68.61	63.95
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	17.27	62.83
Os07t0200700-01	Rice	cytosol	62.04	62.2
Zm00001d034516_P001	Maize	cytosol	63.02	60.94
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	65.45	55.93
TraesCS5D01G032600.1	Wheat	cytosol	22.63	52.54
HORVU5Hr1G109300.4	Barley	mitochondrion	63.02	50.29

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	EntrezGene:102582345	MapMan:9.1.5.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004310	GO:GO:0005575	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150
GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016765	GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M0ZV25
PFAM:PF00494	EnsemblPlantsGene:PGSC0003DMG400003408	PGSC:PGSC0003DMG400003408	EnsemblPlants:PGSC0003DMT400008770	ScanProsite:PS01044	ScanProsite:PS01045
PANTHER:PTHR11626	SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559
TMHMM:TMhelix	InterPro:Trans_IPPS_HH	UniParc:UPI0002966BBD	RefSeq:XP_015170407.1	SEG:seg	:

Description

Squalene synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400003408]

Coordinates

chr10:+:45382858..45389649

Molecular Weight (calculated)

47201.8 Da

IEP (calculated)

8.509

GRAVY (calculated)

-0.031

Length

411 amino acids

Sequence
(BLAST)

001: MGILRAILKH PEDIYPLLKL KVAARYAEKQ IPPQPHWAFC YIMLHKVSRS FSLVIKQLPV ELRDAICIFY LVLRALDTVE DDTSVATEVK VPILMSFHRH
101: VYDREWHFSC GTKDYKVLMD QFHHVSTAFL ELGKHYKEAI EDITMRMGAG MAKFIYKEVE TIDDYDEYCH HVAGLVGLGL SKLFHASGKE DVASDSLCNS
201: MGLFLQKTNI IRDYLEDINE VPKCRMFWPR QIWSKYVDKL EDLKYEENSV KAIQCLNEMV TNSLSHVEDC LTFLSTLRDP AIFRFCAIPQ VMAIGTLAKC
301: YNNIEVFRGV VKMRRGLTAQ VIDRTRNMAD VYGAFFDFSC ILKSKVEYKD PQVAKTLKRL EVILRTCKNS GTLNKRKSFV IKSGPNYNST FVVVLVVLVA
401: ILLGYQSGNR T

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.