Factsheet for GSMUA_Achr4P17290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017668.1-P	Field mustard	cytosol	53.24	64.2
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	10.24	56.6
Os03t0805100-01	Rice	cytosol	75.09	54.59
TraesCS5A01G454500.1	Wheat	cytosol	74.06	53.71
TraesCS5B01G464600.1	Wheat	cytosol	73.72	53.47
EER93257	Sorghum	cytosol	73.38	53.35
TraesCS5D01G465000.1	Wheat	cytosol	73.38	53.22
Zm00001d013048_P005	Maize	cytosol	72.01	52.62
VIT_03s0038g00450.t01	Wine grape	cytosol	72.7	51.57
Bra017667.1-P	Field mustard	cytosol	67.92	51.42
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	71.33	50.85
CDX75450	Canola	cytosol	68.94	50.75
CDX69075	Canola	cytosol	68.94	50.75
Bra011548.1-P	Field mustard	cytosol	68.94	50.75
CDX76294	Canola	cytosol	68.94	50.5
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	81.91	49.9
Os07t0200700-01	Rice	cytosol	68.94	49.27
Zm00001d034516_P001	Maize	cytosol	71.33	49.18
AT4G34640.1	Thale cress	cytosol	67.92	48.54
CDY45322	Canola	cytosol	66.21	47.67
CDY17472	Canola	cytosol	69.28	47.65
PGSC0003DMT400008770	Potato	cytosol	66.55	47.45
CDX72493	Canola	cytosol	67.58	46.48
CDX75451	Canola	cytosol	64.51	45.76
Bra034641.1-P	Field mustard	cytosol	68.6	45.58
Solyc10g079040.1.1	Tomato	cytosol	48.12	45.48
Bra011549.1-P	Field mustard	cytosol	64.85	45.45
PGSC0003DMT400089434	Potato	cytosol	59.04	45.29
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	63.82	45.28
CDX69076	Canola	cytosol, plasma membrane, plastid	64.51	44.16
Solyc10g054130.1.1	Tomato	unclear	65.19	43.81
CDX72494	Canola	cytosol	57.34	42.53
HORVU5Hr1G109300.4	Barley	mitochondrion	73.72	41.94
Solyc10g079060.1.1	Tomato	cytosol	60.41	41.45
CDY45323	Canola	cytosol	21.84	29.36
TraesCS5D01G032600.1	Wheat	cytosol	7.51	12.43
KRH58230	Soybean	mitochondrion	1.02	3.75
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	0.34	0.88

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004310	GO:GO:0005575	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152
GO:GO:0008610	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016765	GO:GO:0051996	EnsemblPlantsGene:GSMUA_Achr4G17290_001	EnsemblPlants:GSMUA_Achr4P17290_001	EnsemblPlants:GSMUA_Achr4T17290_001	InterPro:IPR008949
InterPro:Isoprenoid_synthase_dom_sf	UniProt:M0SPP2	PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045	PANTHER:PTHR11626
SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	TMHMM:TMhelix
InterPro:Trans_IPPS_HH	UniParc:UPI0002959F09	:	:	:	:

Description

Squalene synthase [Source:GMGC_GENE;Acc:GSMUA_Achr4G17290_001]

Coordinates

chr4:+:16777506..16789940

Molecular Weight (calculated)

33300.4 Da

IEP (calculated)

6.095

GRAVY (calculated)

0.035

Length

293 amino acids

Sequence
(BLAST)

001: MDKLHLVSTA FLELERSYQE AIEDITKRMG AGMAKFICKE VETTDDYDEY CHYVAGLVGL GLSKLFHASG SEELAPDNLS NSMGLFLQKT NIIRDYLEDI
101: NEIPKSRMFW PHQIWSKYAN KLEDFKYVEN STKAVQCLND LVTNALIHAE DCLQYMSGLK DLSIFRFAAI PQIMAIGTLA LCYNNVEVFR GVVKMRRGLT
201: AKVIDQTYSM SDVYGAFYEF SSLLKSKIDN NDPNASLTHQ RVDAIQKTCI SSGLLSKRSL HVYESKFHYV TLLIMVVFLL VAMLIPFILD GYI

Best Arabidopsis Sequence Match ( AT4G34640.2 )
(BLAST)

001: MIRYVSTYKM VCVFYLVLRA LDTVEDDTSI PTDEKVPILI AFHRHIYDTD WHYSCGTKEY KILMDQFHHV SAAFLELEKG YQEAIEEITR RMGAGMAKFI
101: CQEVETVDDY DEYCHYVAGL VGLGLSKLFL AAGSEVLTPD WEAISNSMGL FLQKTNIIRD YLEDINEIPK SRMFWPREIW GKYADKLEDL KYEENTNKSV
201: QCLNEMVTNA LMHIEDCLKY MVSLRDPSIF RFCAIPQIMA IGTLALCYNN EQVFRGVVKL RRGLTAKVID RTKTMADVYG AFYDFSCMLK TKVDKNDPNA
301: SKTLNRLEAV QKLCRDAGVL QNRKSYVNDK GQPNSVFIIM VVILLAIVFA YLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.