Factsheet for Bra034641.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	Bra012567.1-P	AT4G19030.1	21798944
AT4G34640.1	Bra013361.1-P	AT4G19030.1	21798944
AT4G34640.1	Bra002403.1-P	AT5G22290.1	21798944
AT4G34640.1	Bra006619.1-P	AT5G22290.1	21798944
AT4G34640.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76294	Canola	cytosol	89.12	98.25
Bra011548.1-P	Field mustard	cytosol	83.9	92.96
AT4G34640.1	Thale cress	cytosol	84.58	90.98
Bra017667.1-P	Field mustard	cytosol	79.59	90.7
KRH24387	Soybean	cytosol	74.15	79.18
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	73.24	78.21
VIT_03s0038g00450.t01	Wine grape	cytosol	72.34	77.24
Bra011549.1-P	Field mustard	cytosol	72.34	76.32
Bra017668.1-P	Field mustard	cytosol	40.59	73.66
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	68.48	73.48
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	17.69	69.03
PGSC0003DMT400008770	Potato	cytosol	63.95	68.61
GSMUA_Achr4P17290_001	Banana	cytosol	45.58	68.6
Os03t0805100-01	Rice	cytosol	61.0	66.75
EER93257	Sorghum	cytosol	60.32	66.0
Zm00001d013048_P005	Maize	cytosol	59.86	65.84
TraesCS5A01G454500.1	Wheat	cytosol	59.86	65.35
TraesCS5D01G465000.1	Wheat	cytosol	59.64	65.1
TraesCS5B01G464600.1	Wheat	cytosol	59.64	65.1
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	7.71	64.15
Os07t0200700-01	Rice	cytosol	59.18	63.66
Solyc10g054130.1.1	Tomato	unclear	62.81	63.53
PGSC0003DMT400089434	Potato	cytosol	54.2	62.57
Zm00001d034516_P001	Maize	cytosol	58.73	60.94
Solyc10g079040.1.1	Tomato	cytosol	42.4	60.32
Solyc10g079060.1.1	Tomato	cytosol	55.33	57.14
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	61.22	56.13
TraesCS5D01G032600.1	Wheat	cytosol	20.86	51.98
HORVU5Hr1G109300.4	Barley	mitochondrion	59.41	50.87

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	MapMan:9.1.5.1	EnsemblPlantsGene:Bra034641	EnsemblPlants:Bra034641.1	EnsemblPlants:Bra034641.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004310	GO:GO:0005575	GO:GO:0006629	GO:GO:0006696
GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016765	GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf
UniProt:M4F0P6	PFAM:PF00494	ScanProsite:PS01045	PANTHER:PTHR11626	SUPFAM:SSF48576	InterPro:Squ/phyt_synthse
InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	TMHMM:TMhelix	InterPro:Trans_IPPS_HH	UniParc:UPI0002546396

Description

AT4G34640 (E=1e-156) SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase

Coordinates

chrA08:-:12324773..12327869

Molecular Weight (calculated)

50546.5 Da

IEP (calculated)

6.691

GRAVY (calculated)

-0.059

Length

441 amino acids

Sequence
(BLAST)

001: MGSLGTFLRY PDDVYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLGT DLRNAVCVFY LVLRALDTVE DDTSIPTDEK LPILIAFHRH
101: IYDTDWHYSC KSEESFNLFE LSHPFGILLC DLQILLNPTL GGTKEYKVLM DQFHHVAAAF LELEKGYQEA IEEITKRMGA GMAKFICQEV ETVDDYDENC
201: HYVAALVGLG LSKLFLASAS EVLLPDWEHI SNSMGLFLQK TNIIRDYLED INEIPKSRMF WPRKIWGKYA DKLEDLKYEE NSTKAVHCLN EMVTNALTHI
301: EDCLNYMAAL RDPSIFRFCA IPQIMAIGTL ALCYNNVQVF RGVVKLRRGL TAKVIDRTKT MADVYGAFYD FSCMLKTKVD KNDPNASMTL NRLDAVQKVC
401: RDTGVLHKRK SYINDKGQSY NVYIVMLVIL LAIVFAYLRA N

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.