Factsheet for Zm00001d034516_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93257	Sorghum	cytosol	86.82	91.56
Zm00001d013048_P005	Maize	cytosol	85.41	90.52
Os03t0805100-01	Rice	cytosol	78.82	83.13
TraesCS5A01G454500.1	Wheat	cytosol	75.53	79.46
TraesCS5B01G464600.1	Wheat	cytosol	75.06	78.96
TraesCS5D01G465000.1	Wheat	cytosol	74.82	78.71
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	19.53	73.45
GSMUA_Achr4P17290_001	Banana	cytosol	49.18	71.33
VIT_03s0038g00450.t01	Wine grape	cytosol	63.53	65.38
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	63.06	65.21
AT4G34640.1	Thale cress	cytosol	62.35	64.63
TraesCS5D01G032600.1	Wheat	cytosol	26.82	64.41
CDX75450	Canola	cytosol	60.24	64.32
Bra011548.1-P	Field mustard	cytosol	60.24	64.32
CDX69075	Canola	cytosol	60.0	64.07
CDX76294	Canola	cytosol	60.0	63.75
PGSC0003DMT400008770	Potato	cytosol	60.94	63.02
HORVU5Hr1G109300.4	Barley	mitochondrion	75.29	62.14
Bra017667.1-P	Field mustard	cytosol	56.24	61.76
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	69.88	61.75
Bra017668.1-P	Field mustard	cytosol	35.29	61.73
CDY45322	Canola	cytosol	59.06	61.67
CDY17472	Canola	cytosol	61.65	61.5
CDX72493	Canola	cytosol	61.65	61.5
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	58.82	60.53
Solyc10g079040.1.1	Tomato	cytosol	43.76	60.0
KRH58230	Soybean	mitochondrion	11.29	60.0
CDX75451	Canola	cytosol	58.12	59.81
PGSC0003DMT400089434	Potato	cytosol	53.65	59.69
CDX72494	Canola	cytosol	55.29	59.49
Bra011549.1-P	Field mustard	cytosol	58.35	59.33
Solyc10g054130.1.1	Tomato	unclear	60.71	59.17
CDY45323	Canola	cytosol	30.35	59.17
Bra034641.1-P	Field mustard	cytosol	60.94	58.73
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	7.29	58.49
CDX69076	Canola	cytosol, plasma membrane, plastid	58.35	57.94
Solyc10g079060.1.1	Tomato	cytosol	54.12	53.86

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	UniProt:A0A1D6L8A5	GO:GO:0003674
GO:GO:0003824	GO:GO:0004310	GO:GO:0005575	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150
GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016765	GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	ProteinID:ONM10474.1
PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045	PANTHER:PTHR11626	SUPFAM:SSF48576	InterPro:Squ/phyt_synthse
InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	InterPro:Trans_IPPS_HH	UniParc:UPI0008438428	EnsemblPlantsGene:Zm00001d034516
EnsemblPlants:Zm00001d034516_P001	EnsemblPlants:Zm00001d034516_T001	:	:	:	:

Description

Squalene synthase 1

Coordinates

chr1:+:295472178..295480650

Molecular Weight (calculated)

48665.5 Da

IEP (calculated)

6.819

GRAVY (calculated)

-0.221

Length

425 amino acids

Sequence
(BLAST)

001: MGALSRPEEV LALVKLRVAA GQIKRQIPPE EHWAFAYSML QKVSRSFALV IQQLGPELRN AVCIFYLVLR ALDTVEDDTS IPTEVKVPIL QEFYRHVYNR
101: DWHYSCGTNH YKVLMDKFHL VSTAFLELGQ GYQKAIEEIT RRMGAGMAKF ICKEVETVDD YDEYCHYVAG LVGYGLSRLF YAAGTEDLAP DSLSNSMGLF
201: LQKTNIIRDY LEDINEIPKS RMFWPREIWS KYADKLEDFK YEENTEKAVQ CLNDIVTNAL IHAEECLQYM SALKNHAIFH FCAIPQIMAI GTCALCYNNV
301: HVFRGVVKMR RGLTARIIDE TNSMSDVYTA FYEFSSLIES KIDDNDPNAA LTRRHVNSIK QTCKSSGLVK RRGYHLDTSP YRPMLVNHDC PPAGGYPFRG
401: TVYQVTCSWP FSPMETRQTL PICPQ

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.