CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	CDX78905	AT4G19030.1	21798944
AT4G34640.1	CDX98596	AT4G19030.1	21798944
AT4G34640.1	CDX99411	AT4G19030.1	21798944
AT4G34640.1	CDY01565	AT4G19030.1	21798944
AT4G34640.1	CDX70995	AT5G22290.1	21798944
AT4G34640.1	CDX88803	AT5G22290.1	21798944
AT4G34640.1	CDX92368	AT5G22290.1	21798944
AT4G34640.1	CDY09128	AT5G22290.1	21798944
AT4G34640.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017667.1-P	Field mustard	cytosol	90.42	95.09
CDX72493	Canola	cytosol	97.05	92.72
CDX76294	Canola	cytosol	87.96	89.5
CDX69075	Canola	cytosol	86.24	88.19
CDX75450	Canola	cytosol	86.24	88.19
AT4G34640.1	Thale cress	cytosol	88.45	87.8
CDY17472	Canola	cytosol	90.91	86.85
KRH24387	Soybean	cytosol	77.15	76.03
CDX75451	Canola	cytosol	75.92	74.82
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	75.68	74.58
VIT_03s0038g00450.t01	Wine grape	cytosol	75.43	74.33
CDX69076	Canola	cytosol, plasma membrane, plastid	76.9	73.13
CDX72494	Canola	cytosol	69.53	71.65
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	19.41	69.91
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	69.78	69.1
CDY45323	Canola	cytosol	36.36	67.89
PGSC0003DMT400008770	Potato	cytosol	67.08	66.42
GSMUA_Achr4P17290_001	Banana	cytosol	47.67	66.21
Os03t0805100-01	Rice	cytosol	63.64	64.27
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	8.35	64.15
Zm00001d013048_P005	Maize	cytosol	62.65	63.59
EER93257	Sorghum	cytosol	62.41	63.03
TraesCS5A01G454500.1	Wheat	cytosol	62.41	62.87
TraesCS5B01G464600.1	Wheat	cytosol	62.16	62.62
TraesCS5D01G465000.1	Wheat	cytosol	61.67	62.13
Solyc10g054130.1.1	Tomato	unclear	65.85	61.47
Os07t0200700-01	Rice	cytosol	61.92	61.46
PGSC0003DMT400089434	Potato	cytosol	55.53	59.16
Zm00001d034516_P001	Maize	cytosol	61.67	59.06
Solyc10g079040.1.1	Tomato	cytosol	43.73	57.42
Solyc10g079060.1.1	Tomato	cytosol	57.0	54.33
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	63.64	53.85
HORVU5Hr1G109300.4	Barley	mitochondrion	62.16	49.13
TraesCS5D01G032600.1	Wheat	cytosol	20.88	48.02

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:A0A078I5G6	UniProt:A0A078I5G6
EnsemblPlants:CDY45322	ProteinID:CDY45322	ProteinID:CDY45322.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310
GO:GO:0005575	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016765
GO:GO:0051996	EnsemblPlantsGene:GSBRNA2T00081779001	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00494	ScanProsite:PS01044
ScanProsite:PS01045	PANTHER:PTHR11626	MetaCyc:PWY-5670	SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like
InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	TMHMM:TMhelix	InterPro:Trans_IPPS_HH	UniPathway:UPA00767	UniParc:UPI0004EE2952

Description

BnaA03g52950DBnaA03g52950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5G6]

Coordinates

chrLK032620:+:138678..141413

Molecular Weight (calculated)

46748.8 Da

IEP (calculated)

7.222

GRAVY (calculated)

-0.150

Length

407 amino acids

Sequence
(BLAST)

001: MGSLGTFLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWAFC YSMLHKVSRS FSLVIQQLGT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK LPILIAFHRH
101: IYDTDWHYSC KWYQGIQAFL ELEKGYQEAI EEITKRMGAG MAKFICHEVE TVDDYDEYCH YVAGLVGLGL SKLFLASGSE VLTPDWEHIS NSMGLFLQKT
201: NIIRDYLEDI NEIPKSRMFW PRKIWGKYAG KLEDLKYEKN SSNAVQCLNE MVTNALTHIE DCLKYMAALR DPSIFRFCAI PQIMAIGTLA LCYNNVQVFR
301: GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NEPNASKTLK QLEDVQQLCR DNGVLHKRKS YVNDKGQSNN LYIVMLVILL AIVFAYLRAN
401: GVVSDEQ

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.