CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	31.19	60.18
CDX72494	Canola	cytosol	94.95	52.41
CDX75451	Canola	cytosol	83.03	43.83
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	80.28	42.37
CDX69076	Canola	cytosol, plasma membrane, plastid	83.03	42.29
TraesCS5D01G032600.1	Wheat	cytosol	33.95	41.81
Bra017668.1-P	Field mustard	cytosol	42.2	37.86
CDX72493	Canola	cytosol	73.85	37.79
VIT_03s0038g00450.t01	Wine grape	cytosol	71.1	37.53
CDX76294	Canola	cytosol	68.81	37.5
KRH24387	Soybean	cytosol	70.64	37.29
CDX69075	Canola	cytosol	67.89	37.19
CDX75450	Canola	cytosol	67.89	37.19
CDY17472	Canola	cytosol	72.48	37.09
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	70.18	37.05
CDY45322	Canola	cytosol	67.89	36.36
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	65.6	34.79
Solyc10g079040.1.1	Tomato	cytosol	49.08	34.52
PGSC0003DMT400008770	Potato	cytosol	64.68	34.31
Solyc10g054130.1.1	Tomato	unclear	64.68	32.34
EER93257	Sorghum	cytosol	58.72	31.76
Zm00001d013048_P005	Maize	cytosol	57.8	31.42
PGSC0003DMT400089434	Potato	cytosol	54.59	31.15
Zm00001d034516_P001	Maize	cytosol	59.17	30.35
Os03t0805100-01	Rice	cytosol	55.96	30.27
Os07t0200700-01	Rice	cytosol	56.88	30.24
TraesCS5A01G454500.1	Wheat	cytosol	55.96	30.2
TraesCS5B01G464600.1	Wheat	cytosol	55.5	29.95
TraesCS5D01G465000.1	Wheat	cytosol	55.05	29.7
Solyc10g079060.1.1	Tomato	cytosol	54.59	27.87
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	61.47	27.86
HORVU5Hr1G109300.4	Barley	mitochondrion	53.67	22.72
GSMUA_Achr4P17290_001	Banana	cytosol	29.36	21.84
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	1.38	5.66

Protein Annotations

EnsemblPlants:CDY45323	EnsemblPlantsGene:GSBRNA2T00081783001	Gene3D:1.10.600.10	GO:A0A078I828	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf
InterPro:Squ/phyt_synthse	PANTHER:PTHR11626	PFAM:PF00494	ProteinID:CDY45323	ProteinID:CDY45323.1	SUPFAM:SSF48576
UniParc:UPI0004EE77FC	UniProt:A0A078I828	MapMan:9.1.5.1	:	:	:

Description

BnaA03g52960DBnaA03g52960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I828]

Coordinates

chrLK032620:+:148075..149453

Molecular Weight (calculated)

25020.4 Da

IEP (calculated)

5.756

GRAVY (calculated)

0.009

Length

218 amino acids

Sequence
(BLAST)

001: MGSLSTILIH PDEIYPLLKL KLAITKAQKQ IPLDPHLTFC YSTLNKVFKT FSLIIQQLGT ELRDAVCVFY LILRALDTVE DDTSIPTEIK VPIRIAFHRH
101: IYDRDWHFVC GEEKYKVLME QFHHVSAAFL ELEKGYQEII EDITKRMGAG MAKFISKEVE TVDDYDEYCH YAAGLVGLGM SKLLLSSELE TVTPNWEQLS
201: NSTGLFLQVC MYHHNSIT

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.