Factsheet for GSMUA_Achr4P17270_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
endoplasmic reticulum 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58230	Soybean	mitochondrion	38.05	53.75
TraesCS5D01G032600.1	Wheat	cytosol	70.8	45.2
CDY45323	Canola	cytosol	60.18	31.19
EER93257	Sorghum	cytosol	75.22	21.09
Zm00001d013048_P005	Maize	cytosol	74.34	20.95
Os03t0805100-01	Rice	cytosol	72.57	20.35
TraesCS5B01G464600.1	Wheat	cytosol	72.57	20.3
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	85.84	20.17
TraesCS5D01G465000.1	Wheat	cytosol	71.68	20.05
TraesCS5A01G454500.1	Wheat	cytosol	71.68	20.05
Zm00001d034516_P001	Maize	cytosol	73.45	19.53
CDY45322	Canola	cytosol	69.91	19.41
AT4G34640.1	Thale cress	cytosol	69.03	19.02
Os07t0200700-01	Rice	cytosol	68.14	18.78
CDY17472	Canola	cytosol	69.91	18.54
CDX72493	Canola	cytosol	69.91	18.54
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	67.26	18.49
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	67.26	18.4
CDX75451	Canola	cytosol	66.37	18.16
VIT_03s0038g00450.t01	Wine grape	cytosol	65.49	17.92
Bra011548.1-P	Field mustard	cytosol	62.83	17.84
CDX75450	Canola	cytosol	62.83	17.84
CDX69075	Canola	cytosol	62.83	17.84
CDX72494	Canola	cytosol	61.95	17.72
Bra011549.1-P	Field mustard	cytosol	65.49	17.7
Bra034641.1-P	Field mustard	cytosol	69.03	17.69
CDX69076	Canola	cytosol, plasma membrane, plastid	66.37	17.52
CDX76294	Canola	cytosol	61.95	17.5
PGSC0003DMT400089434	Potato	cytosol	58.41	17.28
PGSC0003DMT400008770	Potato	cytosol	62.83	17.27
Solyc10g054130.1.1	Tomato	unclear	63.72	16.51
HORVU5Hr1G109300.4	Barley	mitochondrion	71.68	15.73
Solyc10g079040.1.1	Tomato	cytosol	41.59	15.16
Solyc10g079060.1.1	Tomato	cytosol	56.64	14.99
Bra017667.1-P	Field mustard	cytosol	50.44	14.73
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	2.65	5.66
Bra017668.1-P	Field mustard	cytosol	0.88	0.41
GSMUA_Achr4P17290_001	Banana	cytosol	0.88	0.34

Protein Annotations

EnsemblPlants:GSMUA_Achr4P17270_001	EnsemblPlants:GSMUA_Achr4T17270_001	EnsemblPlantsGene:GSMUA_Achr4G17270_001	Gene3D:1.10.600.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf
InterPro:Squ/phyt_synthse	PANTHER:PTHR11626	PFAM:PF00494	SUPFAM:SSF48576	UniParc:UPI0002962C0D	UniProt:M0SPP0
MapMan:9.1.5.1	:	:	:	:	:

Description

Squalene synthase [Source:GMGC_GENE;Acc:GSMUA_Achr4G17270_001]

Coordinates

chr4:+:16766740..16773146

Molecular Weight (calculated)

13171.1 Da

IEP (calculated)

8.053

GRAVY (calculated)

0.085

Length

113 amino acids

Sequence
(BLAST)

001: MGMLGTVVAY PEEVYPLVKL KLAADRIRRQ IPAEPHWAFS YSMLQKVSRS FALVIQQLGP QLRNAVCVFY LVLRALDTVE DDTSIPSDIK VPILQNFYRH
101: IYDCEWHFSC KYF

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.