CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	CDX78905	AT4G19030.1	21798944
AT4G34640.1	CDX98596	AT4G19030.1	21798944
AT4G34640.1	CDX99411	AT4G19030.1	21798944
AT4G34640.1	CDY01565	AT4G19030.1	21798944
AT4G34640.1	CDX70995	AT5G22290.1	21798944
AT4G34640.1	CDX88803	AT5G22290.1	21798944
AT4G34640.1	CDX92368	AT5G22290.1	21798944
AT4G34640.1	CDY09128	AT5G22290.1	21798944
AT4G34640.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75450	Canola	cytosol	93.0	93.47
CDX69075	Canola	cytosol	92.75	93.22
CDY17472	Canola	cytosol	99.0	92.96
Bra034641.1-P	Field mustard	cytosol	98.25	89.12
AT4G34640.1	Thale cress	cytosol	91.25	89.02
CDX72493	Canola	cytosol	93.75	88.03
CDY45322	Canola	cytosol	89.5	87.96
KRH24387	Soybean	cytosol	80.25	77.72
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	79.25	76.76
CDX75451	Canola	cytosol	79.0	76.51
VIT_03s0038g00450.t01	Wine grape	cytosol	78.5	76.03
CDX69076	Canola	cytosol, plasma membrane, plastid	79.75	74.53
CDX72494	Canola	cytosol	71.75	72.66
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	74.5	72.51
GSMUA_Achr4P17290_001	Banana	cytosol	50.5	68.94
CDY45323	Canola	cytosol	37.5	68.81
PGSC0003DMT400008770	Potato	cytosol	69.75	67.88
Os03t0805100-01	Rice	cytosol	65.75	65.26
EER93257	Sorghum	cytosol	65.25	64.76
Zm00001d013048_P005	Maize	cytosol	64.5	64.34
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	8.5	64.15
TraesCS5A01G454500.1	Wheat	cytosol	64.75	64.11
TraesCS5B01G464600.1	Wheat	cytosol	64.5	63.86
TraesCS5D01G465000.1	Wheat	cytosol	64.5	63.86
Solyc10g054130.1.1	Tomato	unclear	68.5	62.84
Os07t0200700-01	Rice	cytosol	64.0	62.44
PGSC0003DMT400089434	Potato	cytosol	59.25	62.04
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	17.5	61.95
Solyc10g079040.1.1	Tomato	cytosol	47.5	61.29
Zm00001d034516_P001	Maize	cytosol	63.75	60.0
Solyc10g079060.1.1	Tomato	cytosol	60.75	56.91
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	66.25	55.09
HORVU5Hr1G109300.4	Barley	mitochondrion	64.25	49.9
TraesCS5D01G032600.1	Wheat	cytosol	21.5	48.59

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:A0A078CJR4	EnsemblPlants:CDX76294
ProteinID:CDX76294	ProteinID:CDX76294.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310	GO:GO:0005575
GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016765	GO:GO:0051996
EnsemblPlantsGene:GSBRNA2T00126661001	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045
PANTHER:PTHR11626	MetaCyc:PWY-5670	SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS
TIGRFAMs:TIGR01559	TMHMM:TMhelix	InterPro:Trans_IPPS_HH	UniPathway:UPA00767	UniParc:UPI0004EDEA63	:

Description

BnaA08g11060D

Coordinates

chrLK031807:+:187890..191184

Molecular Weight (calculated)

45821.9 Da

IEP (calculated)

7.446

GRAVY (calculated)

-0.080

Length

400 amino acids

Sequence
(BLAST)

001: MGSLGTFLRY PDDVYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLGT DLRNAVCVFY LVLRALDTVE DDTSIPTDEK LPILIAFHRG
101: TKEYKVLMDQ FHHVAAAFLE LEKGYQEAIE EITKRMGAGM AKFICQEVET VDDYDEYCHY VAGLVGLGLS KLFLASGTEV LLPDWEQISN SMGLFLQKTN
201: IIRDYLEDIN EIPKSRMFWP RKIWGKYADK LEDLKYEENS TKAVHCLNEM VTNALTHIED CLNYMAALRD PSIFRFCAIP QQIMAIGTLA LCYNNVQVFR
301: GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASMTLN RLEAVQKVCR DTGVLHKRKS YINDKGQSYN VYIVMLVILL AIVFAYLRAN

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.