Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089434 | Potato | cytosol | 88.68 | 12.3 |
| Bra017668.1-P | Field mustard | cytosol | 49.06 | 10.7 |
| GSMUA_Achr4P17290_001 | Banana | cytosol | 56.6 | 10.24 |
| PGSC0003DMT400008770 | Potato | cytosol | 69.81 | 9.0 |
| KRH29364 | Soybean | endoplasmic reticulum, mitochondrion | 69.81 | 8.96 |
| Bra017667.1-P | Field mustard | cytosol | 64.15 | 8.79 |
| KRH24387 | Soybean | cytosol | 67.92 | 8.72 |
| Bra011548.1-P | Field mustard | cytosol | 64.15 | 8.54 |
| CDX69075 | Canola | cytosol | 64.15 | 8.54 |
| CDX75450 | Canola | cytosol | 64.15 | 8.54 |
| CDX76294 | Canola | cytosol | 64.15 | 8.5 |
| VIT_03s0038g00450.t01 | Wine grape | cytosol | 66.04 | 8.47 |
| CDY45322 | Canola | cytosol | 64.15 | 8.35 |
| AT4G34640.1 | Thale cress | cytosol | 62.26 | 8.05 |
| AT4G34650.1 | Thale cress | cytosol, nucleus, plasma membrane | 62.26 | 7.99 |
| CDY17472 | Canola | cytosol | 64.15 | 7.98 |
| CDX72493 | Canola | cytosol | 64.15 | 7.98 |
| CDX75451 | Canola | cytosol | 60.38 | 7.75 |
| Zm00001d013048_P005 | Maize | cytosol | 58.49 | 7.73 |
| CDX69076 | Canola | cytosol, plasma membrane, plastid | 62.26 | 7.71 |
| Bra034641.1-P | Field mustard | cytosol | 64.15 | 7.71 |
| EER93257 | Sorghum | cytosol | 58.49 | 7.69 |
| Os03t0805100-01 | Rice | cytosol | 58.49 | 7.69 |
| Bra011549.1-P | Field mustard | cytosol | 60.38 | 7.66 |
| TraesCS5D01G465000.1 | Wheat | cytosol | 56.6 | 7.43 |
| CDX72494 | Canola | cytosol | 54.72 | 7.34 |
| Zm00001d034516_P001 | Maize | cytosol | 58.49 | 7.29 |
| TraesCS5A01G454500.1 | Wheat | cytosol | 54.72 | 7.18 |
| TraesCS5B01G464600.1 | Wheat | cytosol | 54.72 | 7.18 |
| GSMUA_Achr2P12480_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 64.15 | 7.07 |
| Os07t0200700-01 | Rice | cytosol | 50.94 | 6.59 |
| Solyc10g079040.1.1 | Tomato | cytosol | 37.74 | 6.45 |
| HORVU5Hr1G109300.4 | Barley | mitochondrion | 54.72 | 5.63 |
| TraesCS5D01G032600.1 | Wheat | cytosol | 9.43 | 2.82 |
| GSMUA_Achr4P17270_001 | Banana | cytosol, extracellular, plastid | 5.66 | 2.65 |
| CDY45323 | Canola | cytosol | 5.66 | 1.38 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400021134 | EnsemblPlantsGene:PGSC0003DMG400008184 | Gene3D:1.10.600.10 | InterPro:IPR008949 | InterPro:Isoprenoid_synthase_dom_sf | PGSC:PGSC0003DMG400008184 |
| UniParc:UPI000296ADBF | UniProt:M1AEP1 | MapMan:35.1 | : | : | : |
Description
Squalene synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400008184]
Coordinates
chr10:-:58676500..58677028
Molecular Weight (calculated)
6154.7 Da
IEP (calculated)
6.364
GRAVY (calculated)
0.268
Length
53 amino acids
Sequence
(BLAST)
(BLAST)
1: MGNLMMYYNN VEIFKGVVEM RRGLCAKIID QTRTMADVYG AFFDFCCIME SKV
001: MGSLSTILRH PDELYPLLKL KLAITKAQKQ IPLEPHLAFC YSILHKVSKS FSLVIQQLGT ELRNAVCVFY LILRALDTVE DDTSVPVEIK VPILIAFHRH
101: IYDGDWHFSC GTKEYKLLMD QFHHVSAAFL KLEKGYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YAAGLVGLGL SKIFIASELE ILTPDWKQIS
201: NSTGLFLQKT NIIKDYLEDI NERPKSRMFW PREIWGKYVD KLEDFKNEEK ATKAVQCLNE MVTNALNHVE DCLKSLASLR DPAIFQSCAI PQIVAIGTLA
301: LCYNNVQVFR GVVRLRRGLI AKVIDRTKTM DDVYGAFYDF SCMLQTKVDN NDPNAMKTLN RLETIKKFCK ENGGLHKRKS YVNDETQSKA IFVVMFVLLL
401: AIVVVYLKAN QCK
101: IYDGDWHFSC GTKEYKLLMD QFHHVSAAFL KLEKGYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YAAGLVGLGL SKIFIASELE ILTPDWKQIS
201: NSTGLFLQKT NIIKDYLEDI NERPKSRMFW PREIWGKYVD KLEDFKNEEK ATKAVQCLNE MVTNALNHVE DCLKSLASLR DPAIFQSCAI PQIVAIGTLA
301: LCYNNVQVFR GVVRLRRGLI AKVIDRTKTM DDVYGAFYDF SCMLQTKVDN NDPNAMKTLN RLETIKKFCK ENGGLHKRKS YVNDETQSKA IFVVMFVLLL
401: AIVVVYLKAN QCK
Arabidopsis Description
SQS2Inactive squalene synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65688]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.