Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75451 | Canola | cytosol | 85.47 | 85.47 |
| Bra011549.1-P | Field mustard | cytosol | 85.47 | 84.45 |
| CDX72494 | Canola | cytosol | 79.18 | 82.78 |
| CDX69076 | Canola | cytosol, plasma membrane, plastid | 84.99 | 82.01 |
| CDY45323 | Canola | cytosol | 42.37 | 80.28 |
| AT4G34640.1 | Thale cress | cytosol | 78.45 | 79.02 |
| Bra017668.1-P | Field mustard | cytosol | 46.49 | 79.01 |
| KRH24387 | Soybean | cytosol | 73.85 | 73.85 |
| VIT_03s0038g00450.t01 | Wine grape | cytosol | 73.37 | 73.37 |
| KRH29364 | Soybean | endoplasmic reticulum, mitochondrion | 72.64 | 72.64 |
| Solyc01g110290.2.1 | Tomato | cytosol, nucleus, unclear | 68.77 | 69.1 |
| PGSC0003DMT400008770 | Potato | cytosol | 67.31 | 67.64 |
| GSMUA_Achr4P17270_001 | Banana | cytosol, extracellular, plastid | 18.4 | 67.26 |
| PGSC0003DMT400089434 | Potato | cytosol | 60.05 | 64.92 |
| GSMUA_Achr4P17290_001 | Banana | cytosol | 45.28 | 63.82 |
| Os03t0805100-01 | Rice | cytosol | 61.5 | 63.03 |
| Zm00001d013048_P005 | Maize | cytosol | 61.02 | 62.84 |
| Solyc10g054130.1.1 | Tomato | unclear | 66.1 | 62.61 |
| EER93257 | Sorghum | cytosol | 60.77 | 62.28 |
| PGSC0003DMT400021134 | Potato | cytosol, extracellular, peroxisome | 7.99 | 62.26 |
| TraesCS5A01G454500.1 | Wheat | cytosol | 60.77 | 62.13 |
| TraesCS5B01G464600.1 | Wheat | cytosol | 60.53 | 61.88 |
| TraesCS5D01G465000.1 | Wheat | cytosol | 60.05 | 61.39 |
| Solyc10g079040.1.1 | Tomato | cytosol | 45.52 | 60.65 |
| Os07t0200700-01 | Rice | cytosol | 59.08 | 59.51 |
| Solyc10g079060.1.1 | Tomato | cytosol | 61.26 | 59.25 |
| Zm00001d034516_P001 | Maize | cytosol | 60.53 | 58.82 |
| GSMUA_Achr2P12480_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 63.44 | 54.47 |
| TraesCS5D01G032600.1 | Wheat | cytosol | 21.31 | 49.72 |
| HORVU5Hr1G109300.4 | Barley | mitochondrion | 59.81 | 47.96 |
Protein Annotations
| KEGG:00100+2.5.1.21 | KEGG:00909+2.5.1.21 | Gene3D:1.10.600.10 | EntrezGene:829617 | MapMan:9.1.5.1 | ProteinID:AAB61927.1 |
| ProteinID:AEE86404.1 | ArrayExpress:AT4G34650 | EnsemblPlantsGene:AT4G34650 | RefSeq:AT4G34650 | TAIR:AT4G34650 | RefSeq:AT4G34650-TAIR-G |
| EnsemblPlants:AT4G34650.1 | TAIR:AT4G34650.1 | ProteinID:CAA18844.2 | ProteinID:CAB80182.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004310 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0006629 | GO:GO:0006696 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016126 | GO:GO:0016740 |
| GO:GO:0045338 | GO:GO:0051996 | InterPro:IPR008949 | InterPro:Isoprenoid_synthase_dom_sf | RefSeq:NP_195191.2 | UniProt:O65688 |
| PFAM:PF00494 | PO:PO:0000035 | PO:PO:0000036 | PO:PO:0000293 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009006 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009047 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PANTHER:PTHR11626 | Symbol:SQS2 | SUPFAM:SSF48576 | InterPro:Squ/phyt_synthse | InterPro:Squal_synth-like |
| TIGRFAMs:TIGR01559 | TMHMM:TMhelix | InterPro:Trans_IPPS_HH | UniParc:UPI000009DC02 | SEG:seg | : |
Description
SQS2Inactive squalene synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65688]
Coordinates
chr4:+:16542242..16545194
Molecular Weight (calculated)
47185.7 Da
IEP (calculated)
8.011
GRAVY (calculated)
-0.055
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLSTILRH PDELYPLLKL KLAITKAQKQ IPLEPHLAFC YSILHKVSKS FSLVIQQLGT ELRNAVCVFY LILRALDTVE DDTSVPVEIK VPILIAFHRH
101: IYDGDWHFSC GTKEYKLLMD QFHHVSAAFL KLEKGYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YAAGLVGLGL SKIFIASELE ILTPDWKQIS
201: NSTGLFLQKT NIIKDYLEDI NERPKSRMFW PREIWGKYVD KLEDFKNEEK ATKAVQCLNE MVTNALNHVE DCLKSLASLR DPAIFQSCAI PQIVAIGTLA
301: LCYNNVQVFR GVVRLRRGLI AKVIDRTKTM DDVYGAFYDF SCMLQTKVDN NDPNAMKTLN RLETIKKFCK ENGGLHKRKS YVNDETQSKA IFVVMFVLLL
401: AIVVVYLKAN QCK
101: IYDGDWHFSC GTKEYKLLMD QFHHVSAAFL KLEKGYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YAAGLVGLGL SKIFIASELE ILTPDWKQIS
201: NSTGLFLQKT NIIKDYLEDI NERPKSRMFW PREIWGKYVD KLEDFKNEEK ATKAVQCLNE MVTNALNHVE DCLKSLASLR DPAIFQSCAI PQIVAIGTLA
301: LCYNNVQVFR GVVRLRRGLI AKVIDRTKTM DDVYGAFYDF SCMLQTKVDN NDPNAMKTLN RLETIKKFCK ENGGLHKRKS YVNDETQSKA IFVVMFVLLL
401: AIVVVYLKAN QCK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.