CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45323	Canola	cytosol	52.41	94.95
Bra017668.1-P	Field mustard	cytosol	57.22	93.0
CDX75451	Canola	cytosol	86.33	82.57
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	82.78	79.18
CDX69076	Canola	cytosol, plasma membrane, plastid	84.81	78.27
CDX69075	Canola	cytosol	72.66	72.11
CDX75450	Canola	cytosol	72.66	72.11
CDX76294	Canola	cytosol	72.66	71.75
CDY45322	Canola	cytosol	71.65	69.53
CDX72493	Canola	cytosol	74.94	69.48
CDY17472	Canola	cytosol	74.68	69.25
VIT_03s0038g00450.t01	Wine grape	cytosol	71.65	68.52
KRH24387	Soybean	cytosol	71.65	68.52
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	70.89	67.8
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	67.09	64.48
PGSC0003DMT400008770	Potato	cytosol	64.56	62.04
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	17.72	61.95
PGSC0003DMT400089434	Potato	cytosol	56.71	58.64
Solyc10g054130.1.1	Tomato	unclear	64.56	58.49
Zm00001d013048_P005	Maize	cytosol	58.73	57.86
EER93257	Sorghum	cytosol	58.99	57.82
Solyc10g079040.1.1	Tomato	cytosol	45.06	57.42
GSMUA_Achr4P17290_001	Banana	cytosol	42.53	57.34
Os03t0805100-01	Rice	cytosol	58.48	57.32
TraesCS5A01G454500.1	Wheat	cytosol	58.23	56.93
TraesCS5B01G464600.1	Wheat	cytosol	57.97	56.68
TraesCS5D01G465000.1	Wheat	cytosol	57.47	56.19
Os07t0200700-01	Rice	cytosol	57.47	55.37
Zm00001d034516_P001	Maize	cytosol	59.49	55.29
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	7.34	54.72
Solyc10g079060.1.1	Tomato	cytosol	56.71	52.46
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	60.76	49.9
TraesCS5D01G032600.1	Wheat	cytosol	20.51	45.76
HORVU5Hr1G109300.4	Barley	mitochondrion	56.96	43.69

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:A0A078C8H2	EnsemblPlants:CDX72494
ProteinID:CDX72494	ProteinID:CDX72494.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310	GO:GO:0005575
GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0051996	EnsemblPlantsGene:GSBRNA2T00100023001
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00494	PANTHER:PTHR11626	MetaCyc:PWY-5670	SUPFAM:SSF48576
InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	TIGRFAMs:TIGR01559	InterPro:Trans_IPPS_HH	UniPathway:UPA00767	UniParc:UPI0004EDD5C0
SEG:seg	:	:	:	:	:

Description

BnaC07g45160D

Coordinates

chrLK031796:+:1562883..1565333

Molecular Weight (calculated)

45224.0 Da

IEP (calculated)

6.293

GRAVY (calculated)

-0.150

Length

395 amino acids

Sequence
(BLAST)

001: MGSLSTILRH PDEIYPLLKL KLAITKAQKQ IPLDPHLTFC YSTLNKVSKT FSLIIQQLGT ELRDAVCLFY LILRALDTVE DDTSIPTEIK VPILIAFHRH
101: IYDRDWHFVC GEEKYKVLME QFHHVSAAFL ELEKGYQEII EDITKRMGAG MAKFISKEVE TVDDYDEYCH YAAGLVGLGM SKLLLSSELE TVTPNWEQLS
201: NSTGLFLQKT NIIKDYLEDV NEIPKPRMFW PREIWGKYVD KLEDLKDEDK STKAVQCLND MITNALIHVE DCLKSMAALR DPAILHSCSI PLIVAIGTLA
301: LCYNNIQVFR GSLKLRRGLI AKVFDRTKTM DDVCGAFYDF SCMLETKVDK KDPNAMKTLN RLETIKKVCR EYGGDIHQRK SYVNDEIQSN ALFVS

Best Arabidopsis Sequence Match ( AT4G34650.1 )
(BLAST)

001: MGSLSTILRH PDELYPLLKL KLAITKAQKQ IPLEPHLAFC YSILHKVSKS FSLVIQQLGT ELRNAVCVFY LILRALDTVE DDTSVPVEIK VPILIAFHRH
101: IYDGDWHFSC GTKEYKLLMD QFHHVSAAFL KLEKGYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YAAGLVGLGL SKIFIASELE ILTPDWKQIS
201: NSTGLFLQKT NIIKDYLEDI NERPKSRMFW PREIWGKYVD KLEDFKNEEK ATKAVQCLNE MVTNALNHVE DCLKSLASLR DPAIFQSCAI PQIVAIGTLA
301: LCYNNVQVFR GVVRLRRGLI AKVIDRTKTM DDVYGAFYDF SCMLQTKVDN NDPNAMKTLN RLETIKKFCK ENGGLHKRKS YVNDETQSKA IFVVMFVLLL
401: AIVVVYLKAN QCK

Arabidopsis Description

SQS2Inactive squalene synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65688]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.