CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013048_P005	Maize	cytosol	91.81	92.27
Zm00001d034516_P001	Maize	cytosol	91.56	86.82
Os03t0805100-01	Rice	cytosol	84.62	84.62
TraesCS5A01G454500.1	Wheat	cytosol	83.37	83.17
TraesCS5D01G465000.1	Wheat	cytosol	82.88	82.67
TraesCS5B01G464600.1	Wheat	cytosol	82.88	82.67
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	21.09	75.22
GSMUA_Achr4P17290_001	Banana	cytosol	53.35	73.38
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	67.74	66.42
VIT_03s0038g00450.t01	Wine grape	cytosol	67.25	65.62
TraesCS5D01G032600.1	Wheat	cytosol	28.78	65.54
AT4G34640.1	Thale cress	cytosol	66.5	65.37
CDX76294	Canola	cytosol	64.76	65.25
CDX69075	Canola	cytosol	64.27	65.08
Bra011548.1-P	Field mustard	cytosol	64.27	65.08
CDX75450	Canola	cytosol	64.27	65.08
PGSC0003DMT400008770	Potato	cytosol	66.0	64.72
HORVU5Hr1G109300.4	Barley	mitochondrion	82.63	64.66
CDY17472	Canola	cytosol	66.5	62.91
Bra017667.1-P	Field mustard	cytosol	60.3	62.79
CDX72493	Canola	cytosol	66.0	62.44
CDY45322	Canola	cytosol	63.03	62.41
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	74.44	62.37
Bra017668.1-P	Field mustard	cytosol	37.22	61.73
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	62.28	60.77
CDX75451	Canola	cytosol	62.03	60.53
PGSC0003DMT400089434	Potato	cytosol	57.32	60.47
Bra034641.1-P	Field mustard	cytosol	66.0	60.32
Solyc10g054130.1.1	Tomato	unclear	65.01	60.09
KRH58230	Soybean	mitochondrion	11.91	60.0
Bra011549.1-P	Field mustard	cytosol	62.03	59.81
Solyc10g079040.1.1	Tomato	cytosol	45.91	59.68
CDX72494	Canola	cytosol	57.82	58.99
CDY45323	Canola	cytosol	31.76	58.72
CDX69076	Canola	cytosol, plasma membrane, plastid	62.28	58.64
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	7.69	58.49
Solyc10g079060.1.1	Tomato	cytosol	57.32	54.1

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	EntrezGene:8061131	MapMan:9.1.5.1	UniProt:C5WW75
EnsemblPlants:EER93257	ProteinID:EER93257	ProteinID:EER93257.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016126	GO:GO:0016740	GO:GO:0016765
GO:GO:0045338	GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00494	ScanProsite:PS01044
ScanProsite:PS01045	PANTHER:PTHR11626	MetaCyc:PWY-5670	EnsemblPlantsGene:SORBI_3001G049600	SUPFAM:SSF48576	unigene:Sbi.11601
InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	TMHMM:TMhelix	InterPro:Trans_IPPS_HH
UniParc:UPI0001A82A7E	RefSeq:XP_002466259.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:3624569..3631215

Molecular Weight (calculated)

46317.1 Da

IEP (calculated)

7.267

GRAVY (calculated)

-0.113

Length

403 amino acids

Sequence
(BLAST)

001: MGALSRPEEV LALVKLRVAA GQIKRQIPPE EHWAFGYSML QKVSRSFALV IQQLPPQLRN AVCIFYLVLR ALDTVEDDTS IPTEVKVPIL QEFYRHIYNR
101: DWHFSCGTNH YRVLMDNFHH VSTAFLELGQ GYQKAIEEIT RRMGAGMAKF ICKEVETVDD YDEYCHYVAG LVGYGLSRLF YATGTEDLAP DSLSNSMGLF
201: LQKTNIIRDY LEDINEIPRS RMFWPREIWS KYADKLEDFK YEENSEKAVQ CLNDLVTNAL IHAEECLQYM SALKGHAIFR FCAIPQIMAI GTCALCYNNV
301: HVFRGVVKMR RGLTARIIDE TNSMADVYTS FYEFSSLIES KIDDNDPNAA LTRRRVDSIK QTCKSSGLVK RRGYHLDKSP YRPMLIMIVL LLVAILFGVL
401: YTK

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.