Factsheet for TraesCS5B01G464600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G454500.1	Wheat	cytosol	98.76	98.76
TraesCS5D01G465000.1	Wheat	cytosol	98.51	98.51
EER93257	Sorghum	cytosol	82.67	82.88
Os03t0805100-01	Rice	cytosol	82.43	82.63
Zm00001d013048_P005	Maize	cytosol	81.68	82.29
HORVU5Hr1G109300.4	Barley	mitochondrion	95.79	75.15
Zm00001d034516_P001	Maize	cytosol	78.96	75.06
GSMUA_Achr4P17290_001	Banana	cytosol	53.47	73.72
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	20.3	72.57
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	67.57	66.42
VIT_03s0038g00450.t01	Wine grape	cytosol	67.08	65.62
CDX69075	Canola	cytosol	64.11	65.08
CDX75450	Canola	cytosol	64.11	65.08
Bra011548.1-P	Field mustard	cytosol	64.11	65.08
CDX76294	Canola	cytosol	63.86	64.5
AT4G34640.1	Thale cress	cytosol	64.6	63.66
PGSC0003DMT400008770	Potato	cytosol	64.6	63.5
CDY45322	Canola	cytosol	62.62	62.16
Bra017667.1-P	Field mustard	cytosol	59.41	62.02
CDY17472	Canola	cytosol	65.35	61.97
Bra017668.1-P	Field mustard	cytosol	37.13	61.73
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	73.02	61.33
CDX72493	Canola	cytosol	64.6	61.27
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	61.88	60.53
CDX75451	Canola	cytosol	61.63	60.29
Bra011549.1-P	Field mustard	cytosol	62.13	60.05
PGSC0003DMT400089434	Potato	cytosol	56.44	59.69
Bra034641.1-P	Field mustard	cytosol	65.1	59.64
Solyc10g054130.1.1	Tomato	unclear	63.86	59.17
Solyc10g079040.1.1	Tomato	cytosol	45.05	58.71
CDX69076	Canola	cytosol, plasma membrane, plastid	62.13	58.64
CDX72494	Canola	cytosol	56.68	57.97
CDY45323	Canola	cytosol	29.95	55.5
KRH58230	Soybean	mitochondrion	10.89	55.0
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	7.18	54.72
Solyc10g079060.1.1	Tomato	cytosol	56.44	53.4

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004310	GO:GO:0005575	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152
GO:GO:0008610	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016765	GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00494	ScanProsite:PS01044
ScanProsite:PS01045	PANTHER:PTHR11626	SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS
TIGRFAMs:TIGR01559	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5B01G464600	EnsemblPlants:TraesCS5B01G464600.1	InterPro:Trans_IPPS_HH	TIGR:cd00683
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:639149439..639155073

Molecular Weight (calculated)

46561.7 Da

IEP (calculated)

7.033

GRAVY (calculated)

-0.144

Length

404 amino acids

Sequence
(BLAST)

001: MGMLSRPEEV PALLRLKLAA GRIRRQIPPQ EHWAFAYDML QRVSRSFALV IQQLGPELRN AVCVFYLVLR ALDTVEDDTA IPNEVKLPIL RDFYRHIYNP
101: DWLFSCGAND YRVLMDNFRQ VSTAFLELGE GYQKAIEEIT RRMGEGMAKF ICTEVETIDD YDEYCHYVAG LVGYGLSRLF HATGTEDLAP DHLSNSMGLF
201: LQKTNIIRDY LEDINEIPRC RMFWPREIWS KYVDKLEDLK YEENSEKAVQ CLNDMVTNAL IHAQDCLQYM SALKDNSNFR FCAIPQIMAI GTCAICYNNV
301: KVFRGVVKMR RGLTARVIDE TKSISDVYSA FYEFSSLLES KIDDNDPNAA LTRRRVDAIK KTCKSSGLLK RRGYDLEKSK YRMPMLIMIM LLLVAIILGV
401: LYGK

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.