Factsheet for Zm00001d013048_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93257	Sorghum	cytosol	92.27	91.81
Zm00001d034516_P001	Maize	cytosol	90.52	85.41
Os03t0805100-01	Rice	cytosol	85.54	85.11
TraesCS5A01G454500.1	Wheat	cytosol	82.79	82.18
TraesCS5B01G464600.1	Wheat	cytosol	82.29	81.68
TraesCS5D01G465000.1	Wheat	cytosol	82.04	81.44
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	20.95	74.34
GSMUA_Achr4P17290_001	Banana	cytosol	52.62	72.01
TraesCS5D01G032600.1	Wheat	cytosol	29.18	66.1
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	67.33	65.69
AT4G34640.1	Thale cress	cytosol	66.83	65.37
VIT_03s0038g00450.t01	Wine grape	cytosol	67.08	65.13
CDX76294	Canola	cytosol	64.34	64.5
CDX75450	Canola	cytosol	63.84	64.32
Bra011548.1-P	Field mustard	cytosol	63.84	64.32
HORVU5Hr1G109300.4	Barley	mitochondrion	82.54	64.27
CDX69075	Canola	cytosol	63.59	64.07
PGSC0003DMT400008770	Potato	cytosol	65.59	63.99
CDX72493	Canola	cytosol	66.58	62.68
CDY45322	Canola	cytosol	63.59	62.65
CDY17472	Canola	cytosol	66.33	62.44
Bra017667.1-P	Field mustard	cytosol	60.1	62.27
Bra017668.1-P	Field mustard	cytosol	37.41	61.73
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	73.57	61.33
KRH58230	Soybean	mitochondrion	12.22	61.25
CDX75451	Canola	cytosol	62.84	61.02
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	62.84	61.02
Bra011549.1-P	Field mustard	cytosol	62.59	60.05
Bra034641.1-P	Field mustard	cytosol	65.84	59.86
PGSC0003DMT400089434	Potato	cytosol	56.86	59.69
Solyc10g054130.1.1	Tomato	unclear	64.59	59.4
Solyc10g079040.1.1	Tomato	cytosol	45.64	59.03
CDX69076	Canola	cytosol, plasma membrane, plastid	62.84	58.88
CDX72494	Canola	cytosol	57.86	58.73
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	7.73	58.49
CDY45323	Canola	cytosol	31.42	57.8
Solyc10g079060.1.1	Tomato	cytosol	56.61	53.16

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	EntrezGene:541614	MapMan:9.1.5.1	EMBL:AB007502
ProteinID:AQK62244.1	ProteinID:AQK62247.1	EMBL:BT067860	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310
GO:GO:0005575	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016765
GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:O22106	PFAM:PF00494	ScanProsite:PS01044
ScanProsite:PS01045	PANTHER:PTHR11626	SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS
TIGRFAMs:TIGR01559	TMHMM:TMhelix	InterPro:Trans_IPPS_HH	UniParc:UPI00000AC9F1	EnsemblPlantsGene:Zm00001d013048	EnsemblPlants:Zm00001d013048_P005
EnsemblPlants:Zm00001d013048_T005	SEG:seg	:	:	:	:

Description

squalene synthase1squalene synthase1

Coordinates

chr5:-:3760279..3771088

Molecular Weight (calculated)

46042.9 Da

IEP (calculated)

6.775

GRAVY (calculated)

-0.084

Length

401 amino acids

Sequence
(BLAST)

001: MGALSRPEEV LALVKLRVAA GQIKRQIPPE EHWAFAYSML QKVSRSFALV IQQLGPELRN AVCIFYLVLR ALDTVEDDTS IPTEVKVPIL QEFYRHIYNR
101: DWHYSCGTNH YKMLMDKFRH VSTAFLELGE GYQKAIEEVT RRMGAGMAKF ICKEVETVDD YDEYCHYVAG LVGYGLSRLF YAAGTEDLAL DSLSNSMGLF
201: LQKTNIIRDY LEDINEIPKS RMFWPREIWS KYADKLEDFK YEENSKKAVQ CLNNMVTDAL IHAEECLQYM SALKDPAIFR FCAIPQIMAI GTCALCYNNV
301: HVFRGVVKMR RGLTARIIDE TNSMTDVYTA FYEFSSLIES KIDDSDPNAA LTQRRVDSIK QTCKSSGLVK QRGYHLEKSP YRPMLIMIVL LLVAILFGVM
401: F

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.