Factsheet for Solyc10g054130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT4G34640.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT4G34640.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT4G34640.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008770	Potato	cytosol	88.53	93.92
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	74.77	79.32
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	71.56	75.54
KRH24387	Soybean	cytosol	71.1	75.06
VIT_03s0038g00450.t01	Wine grape	cytosol	70.87	74.82
Bra011548.1-P	Field mustard	cytosol	63.3	69.35
CDX75450	Canola	cytosol	63.3	69.35
CDX69075	Canola	cytosol	62.61	68.59
AT4G34640.1	Thale cress	cytosol	64.45	68.54
CDX76294	Canola	cytosol	62.84	68.5
Bra017667.1-P	Field mustard	cytosol	60.09	67.7
CDX72493	Canola	cytosol	64.91	66.43
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	62.61	66.1
CDX75451	Canola	cytosol	62.61	66.1
Os03t0805100-01	Rice	cytosol	61.01	66.0
CDY17472	Canola	cytosol	64.45	65.96
CDY45322	Canola	cytosol	61.47	65.85
Solyc10g079040.1.1	Tomato	cytosol	46.79	65.81
GSMUA_Achr4P17290_001	Banana	cytosol	43.81	65.19
Bra011549.1-P	Field mustard	cytosol	62.39	65.07
EER93257	Sorghum	cytosol	60.09	65.01
CDY45323	Canola	cytosol	32.34	64.68
Zm00001d013048_P005	Maize	cytosol	59.4	64.59
CDX72494	Canola	cytosol	58.49	64.56
Bra017668.1-P	Field mustard	cytosol	35.78	64.2
TraesCS5A01G454500.1	Wheat	cytosol	59.4	64.11
TraesCS5B01G464600.1	Wheat	cytosol	59.17	63.86
CDX69076	Canola	cytosol, plasma membrane, plastid	62.61	63.78
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	16.51	63.72
TraesCS5D01G465000.1	Wheat	cytosol	58.72	63.37
Bra034641.1-P	Field mustard	cytosol	63.53	62.81
Solyc10g079060.1.1	Tomato	cytosol	60.09	61.36
Os07t0200700-01	Rice	cytosol	57.34	60.98
Zm00001d034516_P001	Maize	cytosol	59.17	60.71
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	61.7	55.93
TraesCS5D01G032600.1	Wheat	cytosol	21.33	52.54
HORVU5Hr1G109300.4	Barley	mitochondrion	58.72	49.71

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004310	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016126	GO:GO:0016740
GO:GO:0016765	GO:GO:0045338	GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:K4D111
PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045	PANTHER:PTHR11626	SUPFAM:SSF48576	EnsemblPlantsGene:Solyc10g054130.1
EnsemblPlants:Solyc10g054130.1.1	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	InterPro:Trans_IPPS_HH
UniParc:UPI000276A9E4	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:54664270..54670181

Molecular Weight (calculated)

50087.0 Da

IEP (calculated)

8.421

GRAVY (calculated)

-0.140

Length

436 amino acids

Sequence
(BLAST)

001: MGILRAILKH PEDIYPLLKL KVAAQYAEKQ IPSQPHWAFC YIMLHKVSRS FSLVIQQLPV ELRDAICIFY LVLRALDTVE DDTSVATEVK VPILMSFHRH
101: VYDREWHFSC GTKDYKVLMD QFHHVSTAFL ELGKQYKEAI EDITMRMGAG MAKFIYKEVE SIDDYDEYCH HVAGLVGLGL SKLFHASGKE DVASDSLCNS
201: MGLFLQKTNI IRDYLEDINE VPKCRMFWPR QIWSKYVDKL EDLKYEENSV KAVQCLNEMV TNALSHIEDC LTFLSTLRDP AIFRFCAIPQ VMAIGTLAKC
301: YNNIEVFRGV VKMRRGLTTQ VIDRTRNMAD VYGAFFDFSC ILKSKVEFKD PHVAKTLKRL EVILRTCKNS GTLNKRKSFV IKSGPNYNST FVSCCPCCLS
401: GYPSRIPIWK PDLDHMTDVR RKSGKKRDGV SSWTSV

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.