Factsheet for HORVU5Hr1G109300.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G464600.1	Wheat	cytosol	75.15	95.79
TraesCS5D01G465000.1	Wheat	cytosol	74.95	95.54
TraesCS5A01G454500.1	Wheat	cytosol	74.76	95.3
EER93257	Sorghum	cytosol	64.66	82.63
Os03t0805100-01	Rice	cytosol	64.66	82.63
Zm00001d013048_P005	Maize	cytosol	64.27	82.54
Zm00001d034516_P001	Maize	cytosol	62.14	75.29
GSMUA_Achr4P17290_001	Banana	cytosol	41.94	73.72
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	15.73	71.68
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	52.82	66.18
VIT_03s0038g00450.t01	Wine grape	cytosol	52.43	65.38
CDX75450	Canola	cytosol	50.1	64.82
Bra011548.1-P	Field mustard	cytosol	50.1	64.82
CDX69075	Canola	cytosol	49.9	64.57
CDX76294	Canola	cytosol	49.9	64.25
AT4G34640.1	Thale cress	cytosol	50.68	63.66
PGSC0003DMT400008770	Potato	cytosol	50.29	63.02
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	58.06	62.16
CDY45322	Canola	cytosol	49.13	62.16
Bra017667.1-P	Field mustard	cytosol	46.6	62.02
CDY17472	Canola	cytosol	51.07	61.74
Bra017668.1-P	Field mustard	cytosol	29.13	61.73
CDX72493	Canola	cytosol	50.68	61.27
PGSC0003DMT400089434	Potato	cytosol	44.47	59.95
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	47.96	59.81
Bra034641.1-P	Field mustard	cytosol	50.87	59.41
CDX75451	Canola	cytosol	47.57	59.32
Bra011549.1-P	Field mustard	cytosol	47.96	59.09
Solyc10g054130.1.1	Tomato	unclear	49.71	58.72
CDX69076	Canola	cytosol, plasma membrane, plastid	48.16	57.94
Solyc10g079040.1.1	Tomato	cytosol	34.76	57.74
CDX72494	Canola	cytosol	43.69	56.96
KRH58230	Soybean	mitochondrion	8.54	55.0
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	5.63	54.72
CDY45323	Canola	cytosol	22.72	53.67
Solyc10g079060.1.1	Tomato	cytosol	44.27	53.4

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	UniProt:A0A287SNW6	GO:GO:0003674
GO:GO:0003824	GO:GO:0004310	GO:GO:0005575	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150
GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016765	GO:GO:0051996	EnsemblPlantsGene:HORVU5Hr1G109300	EnsemblPlants:HORVU5Hr1G109300.4	InterPro:IPR008949
InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045	PANTHER:PTHR11626	SUPFAM:SSF48576
InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	TMHMM:TMhelix	InterPro:Trans_IPPS_HH
UniParc:UPI000B45FC0F	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:629522835..629529363

Molecular Weight (calculated)

57896.1 Da

IEP (calculated)

9.154

GRAVY (calculated)

-0.213

Length

515 amino acids

Sequence
(BLAST)

001: QIRHRLTRQP GPCAVRARRK VTSRPAKRRH PAHGGGGGSN RINTTATSPA GGDNTTAAAH THAPSASVPS RLASPRLASP QDPSGPRRVE REGVGIWFVI
101: CGFSVRAAGA AMGVLSRPEE VAALVRLKVA AGRIRRQIPP EAHWAFAYDM LQRVSRSFAL VIQQLGPELR NAVCVFYLVL RALDTVEDDT GIPNEVKLPI
201: LRDFYRHIYN PDWLFSCGAN DYRVLMDNFR QVSTAFLELG EGYQKAIEEI TRRMGEGMAK FICMEVQTID DYDEYCHYVA GLVGYGLSRL FHATGTEDLA
301: PDHLSNSMGL FLQKTNIIRD YLEDINEIPK CRMFWPREIW SKYVDKLEDL KYEENSEKAV QCLNDMVTNA LIHAHDCLQY MSALKDNSNF RFCAIPQIMA
401: IGTCAICYNN VKVFRGVVKM RRGLTARIID ETKSISDVYS AFYEFSSLLE SKIDDNDPNA ALTRKRVDAI KKTCKSSGLL KRRGYDLEKS KYRMPMLIMI
501: VLLLVAIILG VLYGK

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.