Factsheet for Bra011548.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	Bra012567.1-P	AT4G19030.1	21798944
AT4G34640.1	Bra013361.1-P	AT4G19030.1	21798944
AT4G34640.1	Bra002403.1-P	AT5G22290.1	21798944
AT4G34640.1	Bra006619.1-P	AT5G22290.1	21798944
AT4G34640.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75450	Canola	cytosol	100.0	100.0
Bra017667.1-P	Field mustard	cytosol	87.19	89.66
AT4G34640.1	Thale cress	cytosol	91.46	88.78
Bra034641.1-P	Field mustard	cytosol	92.96	83.9
KRH24387	Soybean	cytosol	79.65	76.76
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	78.64	75.79
Bra011549.1-P	Field mustard	cytosol	79.4	75.6
VIT_03s0038g00450.t01	Wine grape	cytosol	77.64	74.82
Bra017668.1-P	Field mustard	cytosol	45.48	74.49
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	74.12	71.78
GSMUA_Achr4P17290_001	Banana	cytosol	50.75	68.94
PGSC0003DMT400008770	Potato	cytosol	70.35	68.13
Os03t0805100-01	Rice	cytosol	65.58	64.76
TraesCS5A01G454500.1	Wheat	cytosol	65.33	64.36
EER93257	Sorghum	cytosol	65.08	64.27
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	8.54	64.15
TraesCS5B01G464600.1	Wheat	cytosol	65.08	64.11
Zm00001d013048_P005	Maize	cytosol	64.32	63.84
TraesCS5D01G465000.1	Wheat	cytosol	64.57	63.61
Solyc10g054130.1.1	Tomato	unclear	69.35	63.3
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	17.84	62.83
Os07t0200700-01	Rice	cytosol	64.57	62.68
PGSC0003DMT400089434	Potato	cytosol	59.8	62.3
Solyc10g079040.1.1	Tomato	cytosol	48.49	62.26
Zm00001d034516_P001	Maize	cytosol	64.32	60.24
Solyc10g079060.1.1	Tomato	cytosol	60.8	56.67
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	67.34	55.72
HORVU5Hr1G109300.4	Barley	mitochondrion	64.82	50.1
TraesCS5D01G032600.1	Wheat	cytosol	21.61	48.59

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	EnsemblPlantsGene:Bra011548	EnsemblPlants:Bra011548.1
EnsemblPlants:Bra011548.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310	GO:GO:0005575	GO:GO:0006629
GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016765	GO:GO:0051996	InterPro:IPR008949
InterPro:Isoprenoid_synthase_dom_sf	UniProt:M4D4Z1	PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045	PANTHER:PTHR11626
SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	TMHMM:TMhelix
InterPro:Trans_IPPS_HH	UniParc:UPI00025456F7	:	:	:	:

Description

AT4G34640 (E=4e-159) SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase

Coordinates

chrA01:-:1724526..1727909

Molecular Weight (calculated)

45557.5 Da

IEP (calculated)

7.153

GRAVY (calculated)

-0.112

Length

398 amino acids

Sequence
(BLAST)

001: MGSLGTLLRY PDDIYPLLKM KRAIERAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLRP ELRNAVCVFY LVLRALDTVE DDTSIPTDEK LPILIAFHRG
101: TKEYKVLMDQ FHHVSAAFLE LDKGYQEAIE EITKRMGAGM AKFICQEVET VDDYDEYCHY VAGLVGLGLS KLFLASGSEV LTPDWDHISN SMGLFLQKTN
201: IIRDYLEDIN EIPKSRMFWP RKIWGKYADK LEDLKYEENS TKAVNCLNEM VTNALTHIED CLKYMAALRD PSIFRFCAIP QIMAIGTLAL CYNNVQLFRG
301: VVKLRRGLTA KVIDRTKTMA DVYGAFYDFS CMLKTKVDKN DPNASNTLNR LEAVEKVCKD TGVLQKRKSY VNDEGQSNVY IVMLVILLAI VFAYLRAN

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.