Factsheet for Solyc03g082600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 7
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090000.1.1
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc07g066170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53560.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT5G53560.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT5G53560.1	Solyc07g066170.2.1	AT4G26455.1	21798944
AT5G53560.1	Solyc01g090000.1.1	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047688	Potato	cytosol	68.95	97.76
VIT_16s0098g01230.t01	Wine grape	cytosol	58.95	83.58
KRH64355	Soybean	endoplasmic reticulum	61.05	82.86
AT5G53560.1	Thale cress	cytosol	57.89	82.09
Bra022660.1-P	Field mustard	cytosol	56.84	80.6
CDX96233	Canola	cytosol	56.84	80.6
CDY28830	Canola	cytosol	56.84	80.6
CDY14370	Canola	cytosol	60.0	73.08
Solyc06g053170.2.1	Tomato	cytosol, plastid	14.74	71.79
Os10t0518200-01	Rice	plasma membrane, plastid	38.95	71.15
TraesCS1D01G184800.1	Wheat	cytosol	49.47	70.15
TraesCS1A01G181500.1	Wheat	cytosol, golgi	48.95	69.4
EER91363	Sorghum	cytosol	48.42	68.66
GSMUA_Achr1P04070_001	Banana	cytosol	47.89	68.42
Solyc06g083440.2.1	Tomato	cytosol	46.84	66.92
Solyc06g007930.2.1	Tomato	cytosol, endoplasmic reticulum, plastid, unclear	46.84	65.93
KRH53581	Soybean	endoplasmic reticulum	67.37	65.64
Solyc06g053180.2.1	Tomato	plastid	28.42	63.53
Solyc09g061230.2.1	Tomato	cytosol	44.21	63.16
CDY20247	Canola	mitochondrion	61.05	61.05
GSMUA_Achr4P30410_001	Banana	cytosol, extracellular, mitochondrion	51.58	60.12
GSMUA_Achr11P...	Banana	cytosol	40.0	57.58
Zm00001d032442_P002	Maize	cytosol	41.05	56.12
Zm00001d013839_P001	Maize	plasma membrane	48.95	51.1
GSMUA_Achr4P27140_001	Banana	cytosol	39.47	48.39
Solyc12g098320.1.1	Tomato	cytosol	17.37	46.48
HORVU1Hr1G047990.4	Barley	plastid	48.42	45.77
TraesCS1B01G199300.1	Wheat	cytosol	48.95	43.87
Solyc12g008470.1.1	Tomato	mitochondrion	17.89	40.48
Solyc05g012080.2.1	Tomato	cytosol, plastid	27.89	39.85
Solyc04g078140.2.1	Tomato	cytosol	24.74	31.76

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674
GO:GO:0005488	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400	UniProt:K4BI36
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF22
SMART:SM01117	SUPFAM:SSF55856	EnsemblPlantsGene:Solyc03g082600.2	EnsemblPlants:Solyc03g082600.2.1	UniParc:UPI0002768573	SEG:seg

Description

No Description!

Coordinates

chr3:-:52524937..52528606

Molecular Weight (calculated)

21646.0 Da

IEP (calculated)

6.159

GRAVY (calculated)

-0.395

Length

190 amino acids

Sequence
(BLAST)

001: MYHSLPARFP AKLKAIRYLN FYINIDPVLP PPHAKRVLGA QSETETESKE LSLQEKMASD RKIHAFEEVA KHNKTKDCWL IISGKVYDVT PFMDDHPGGD
101: EVLLSATGKD ATNDFEDVGH SDSAREMMDK YYIGEIDMST VPLKRAYIPS EQTAYNPDKT PEFIIKILQF LVPILILGLA FTVRHYTKEQ

Best Arabidopsis Sequence Match ( AT5G53560.1 )
(BLAST)

001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD

Arabidopsis Description

CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.