Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- endoplasmic reticulum 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
extracellular: 25724908 endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID:
25724908
doi
From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0098g01230.t01 | Wine grape | cytosol | 85.0 | 88.81 |
| PGSC0003DMT400013956 | Potato | cytosol | 83.57 | 87.31 |
| PGSC0003DMT400047688 | Potato | cytosol | 82.14 | 85.82 |
| Bra022660.1-P | Field mustard | cytosol | 78.57 | 82.09 |
| CDX96233 | Canola | cytosol | 78.57 | 82.09 |
| AT5G53560.1 | Thale cress | cytosol | 78.57 | 82.09 |
| CDY28830 | Canola | cytosol | 78.57 | 82.09 |
| Os10t0518200-01 | Rice | plasma membrane, plastid | 55.0 | 74.04 |
| EER91363 | Sorghum | cytosol | 68.57 | 71.64 |
| TraesCS1D01G184800.1 | Wheat | cytosol | 67.86 | 70.9 |
| CDY14370 | Canola | cytosol | 78.57 | 70.51 |
| TraesCS1A01G181500.1 | Wheat | cytosol, golgi | 67.14 | 70.15 |
| KRH53581 | Soybean | endoplasmic reticulum | 95.71 | 68.72 |
| GSMUA_Achr1P04070_001 | Banana | cytosol | 63.57 | 66.92 |
| KRG99574 | Soybean | cytosol, endoplasmic reticulum | 62.86 | 65.19 |
| KRH66053 | Soybean | endoplasmic reticulum | 61.43 | 63.7 |
| GSMUA_Achr4P30410_001 | Banana | cytosol, extracellular, mitochondrion | 72.14 | 61.96 |
| Solyc03g082600.2.1 | Tomato | plastid | 82.86 | 61.05 |
| KRG97223 | Soybean | endoplasmic reticulum | 60.71 | 60.28 |
| GSMUA_Achr11P... | Banana | cytosol | 56.43 | 59.85 |
| Zm00001d032442_P002 | Maize | cytosol | 57.86 | 58.27 |
| KRH68944 | Soybean | cytosol | 58.57 | 58.16 |
| CDY20247 | Canola | mitochondrion | 78.57 | 57.89 |
| KRG99780 | Soybean | cytosol | 55.71 | 56.52 |
| KRH47845 | Soybean | endoplasmic reticulum | 56.43 | 55.63 |
| KRH46744 | Soybean | endoplasmic reticulum | 56.43 | 55.63 |
| KRH06410 | Soybean | cytosol | 56.43 | 54.11 |
| Zm00001d013839_P001 | Maize | plasma membrane | 69.29 | 53.3 |
| GSMUA_Achr4P27140_001 | Banana | cytosol | 52.86 | 47.74 |
| HORVU1Hr1G047990.4 | Barley | plastid | 66.43 | 46.27 |
| TraesCS1B01G199300.1 | Wheat | cytosol | 67.14 | 44.34 |
| KRH53553 | Soybean | cytosol | 37.86 | 43.8 |
| KRH61382 | Soybean | cytosol | 39.29 | 39.57 |
| KRH52065 | Soybean | cytosol | 37.86 | 38.69 |
| KRH74256 | Soybean | endoplasmic reticulum, golgi | 25.0 | 29.41 |
| KRH07276 | Soybean | endoplasmic reticulum, plasma membrane | 23.57 | 21.57 |
Protein Annotations
| EntrezGene:100499823 | MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | EMBL:ACUP02002759 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf |
| InterPro:Cyt_B5_heme-BS | EnsemblPlantsGene:GLYMA_04G231800 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0020037 | GO:GO:0046872 | UniProt:I1JYL5 | InterPro:IPR001199 | InterPro:IPR036400 |
| EnsemblPlants:KRH64355 | ProteinID:KRH64355 | ProteinID:KRH64355.1 | PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 |
| PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF22 | SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix |
| UniParc:UPI00023BFCCA | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:50028672..50031608
Molecular Weight (calculated)
15977.1 Da
IEP (calculated)
5.591
GRAVY (calculated)
-0.424
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVNKRMASD RKLHTFEEVA KHDQTKDCWL IISGKVYDVT PFMEDHPGGD EVLLSATGKD ATNDFEDVGH SDSARDMMEK YYIGEIDSST VPLKRTYIPP
101: QQAQYNPDKT PEFVIKILQF LVPLLILGLA FVVRHYTKKE
101: QQAQYNPDKT PEFVIKILQF LVPLLILGLA FVVRHYTKKE
001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
Arabidopsis Description
CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.