CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04210
KRH24687
KRH28186
KRH57502
KRH77301

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46650.1	KRH04210	AT5G47120.1	19054355
AT2G46650.1	KRH24687	AT5G47120.1	19054355
AT2G46650.1	KRH28186	AT5G47120.1	19054355
AT2G46650.1	KRH57502	AT5G47120.1	19054355
AT2G46650.1	KRH77301	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97223	Soybean	endoplasmic reticulum	92.91	92.91
KRH47845	Soybean	endoplasmic reticulum	70.92	70.42
KRH06410	Soybean	cytosol	69.5	67.12
KRH64355	Soybean	endoplasmic reticulum	58.16	58.57
KRG99574	Soybean	cytosol, endoplasmic reticulum	50.35	52.59
KRH66053	Soybean	endoplasmic reticulum	49.65	51.85
AT2G46650.1	Thale cress	cytosol	48.23	51.52
Solyc06g053170.2.1	Tomato	cytosol, plastid	14.18	51.28
KRG99780	Soybean	cytosol	48.94	50.0
TraesCS6A01G240700.1	Wheat	cytosol, golgi, mitochondrion	49.65	49.65
Zm00001d017425_P001	Maize	cytosol	48.94	49.64
TraesCS6D01G222900.1	Wheat	cytosol	49.65	49.3
TraesCS6B01G284000.1	Wheat	cytosol	49.65	49.3
CDY61721	Canola	cytosol	46.81	49.25
CDY27310	Canola	cytosol	46.81	49.25
KRH46744	Soybean	endoplasmic reticulum	48.94	48.59
Bra039268.1-P	Field mustard	cytosol	46.1	48.51
Os02t0649800-01	Rice	plasma membrane	46.81	47.83
Bra004518.1-P	Field mustard	cytosol	45.39	47.76
CDY41545	Canola	cytosol	45.39	47.76
CDX80035	Canola	cytosol	44.68	47.01
KRH53581	Soybean	endoplasmic reticulum	58.87	42.56
KRH53553	Soybean	cytosol	35.46	41.32
HORVU6Hr1G061420.4	Barley	cytosol	46.1	39.88
KRH61382	Soybean	cytosol	36.17	36.69
KRH52065	Soybean	cytosol	34.75	35.77
OQU85747	Sorghum	mitochondrion	49.65	32.71
KRH74256	Soybean	endoplasmic reticulum, golgi	23.4	27.73
KRH07276	Soybean	endoplasmic reticulum, plasma membrane	21.99	20.26

Protein Annotations

EntrezGene:100788796	MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EMBL:ACUP02002128	EMBL:BT096385	UniProt:C6TFJ7
InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	EnsemblPlantsGene:GLYMA_03G259600	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199
InterPro:IPR036400	ProteinID:KRH68942.1	ProteinID:KRH68943.1	EnsemblPlants:KRH68944	ProteinID:KRH68944	ProteinID:KRH68944.1
ProteinID:KRH68945.1	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359
PANTHER:PTHR19359:SF43	SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI0001B166C5	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:45372819..45376604

Molecular Weight (calculated)

15342.3 Da

IEP (calculated)

5.982

GRAVY (calculated)

-0.189

Length

141 amino acids

Sequence
(BLAST)

001: MASNPKPLTF EEVANHNNKK DCWIIINGKV YDITPFLDEH PGGDEVLVTS TGKDATIDFE DVGHSDSAIE MMEKYFVGKV DTSTLPAKVN HSLPQPTQAG
101: GAGNQSSGFV VKILQFLLPF LILGLAFALQ YYGKKKHAST S

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.