Factsheet for Solyc06g053170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46650.1	Solyc01g090000.1.1	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098320.1.1	Tomato	cytosol	43.59	23.94
Solyc06g007930.2.1	Tomato	cytosol, endoplasmic reticulum, plastid, unclear	56.41	16.3
Solyc06g083440.2.1	Tomato	cytosol	53.85	15.79
KRG97223	Soybean	endoplasmic reticulum	56.41	15.6
Solyc12g008470.1.1	Tomato	mitochondrion	33.33	15.48
KRH47845	Soybean	endoplasmic reticulum	53.85	14.79
Solyc03g082600.2.1	Tomato	plastid	71.79	14.74
KRH06410	Soybean	cytosol	53.85	14.38
TraesCS6A01G240700.1	Wheat	cytosol, golgi, mitochondrion	51.28	14.18
KRH68944	Soybean	cytosol	51.28	14.18
TraesCS6D01G222900.1	Wheat	cytosol	51.28	14.08
TraesCS6B01G284000.1	Wheat	cytosol	51.28	14.08
Os02t0649800-01	Rice	plasma membrane	48.72	13.77
Zm00001d017425_P001	Maize	cytosol	46.15	12.95
Solyc09g061230.2.1	Tomato	cytosol	43.59	12.78
HORVU6Hr1G061420.4	Barley	cytosol	51.28	12.27
CDY61721	Canola	cytosol	38.46	11.19
CDY27310	Canola	cytosol	38.46	11.19
Bra039268.1-P	Field mustard	cytosol	38.46	11.19
AT2G46650.1	Thale cress	cytosol	35.9	10.61
Solyc05g012080.2.1	Tomato	cytosol, plastid	35.9	10.53
CDY41545	Canola	cytosol	35.9	10.45
Bra004518.1-P	Field mustard	cytosol	35.9	10.45
CDX80035	Canola	cytosol	33.33	9.7
OQU85747	Sorghum	mitochondrion	48.72	8.88
Solyc04g078140.2.1	Tomato	cytosol	33.33	8.78
Solyc06g053180.2.1	Tomato	plastid	5.13	2.35

Protein Annotations

EnsemblPlants:Solyc06g053170.2.1	EnsemblPlantsGene:Solyc06g053170.2	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:IPR001199
InterPro:IPR036400	PANTHER:PTHR19359	PANTHER:PTHR19359:SF22	PFAM:PF00173	SUPFAM:SSF55856	UniParc:UPI000276748F
UniProt:K4C604	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6:+:35915737..35916490

Molecular Weight (calculated)

4489.6 Da

IEP (calculated)

8.351

GRAVY (calculated)

0.049

Length

39 amino acids

Sequence
(BLAST)

1: MGSDHKVHLF EEVAKHNKTK DCWLIISGKV LNCLFLCKC

Best Arabidopsis Sequence Match ( AT5G53560.1 )
(BLAST)

001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD

Arabidopsis Description

CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.