Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 2
- plasma membrane 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G014450.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46650.1 | HORVU6Hr1G014450.1 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G240700.1 | Wheat | cytosol, golgi, mitochondrion | 74.23 | 85.82 |
| TraesCS6D01G222900.1 | Wheat | cytosol | 74.23 | 85.21 |
| TraesCS6B01G284000.1 | Wheat | cytosol | 74.23 | 85.21 |
| Os02t0649800-01 | Rice | plasma membrane | 56.44 | 66.67 |
| Zm00001d017425_P001 | Maize | cytosol | 55.83 | 65.47 |
| Solyc06g053170.2.1 | Tomato | cytosol, plastid | 12.27 | 51.28 |
| KRH68944 | Soybean | cytosol | 39.88 | 46.1 |
| KRG97223 | Soybean | endoplasmic reticulum | 39.88 | 46.1 |
| AT2G46650.1 | Thale cress | cytosol | 36.81 | 45.45 |
| KRH06410 | Soybean | cytosol | 40.49 | 45.21 |
| KRH47845 | Soybean | endoplasmic reticulum | 39.26 | 45.07 |
| OQU85747 | Sorghum | mitochondrion | 58.28 | 44.39 |
| Bra039268.1-P | Field mustard | cytosol | 36.2 | 44.03 |
| CDY27310 | Canola | cytosol | 36.2 | 44.03 |
| CDY61721 | Canola | cytosol | 36.2 | 44.03 |
| Bra004518.1-P | Field mustard | cytosol | 35.58 | 43.28 |
| CDY41545 | Canola | cytosol | 35.58 | 43.28 |
| CDX80035 | Canola | cytosol | 35.58 | 43.28 |
| HORVU5Hr1G045040.1 | Barley | cytosol, plasma membrane | 34.36 | 41.79 |
| HORVU3Hr1G114360.3 | Barley | plasma membrane | 34.97 | 32.95 |
| HORVU1Hr1G047990.4 | Barley | plastid | 40.49 | 32.84 |
| HORVU5Hr1G095930.3 | Barley | endoplasmic reticulum | 26.38 | 28.48 |
| HORVU5Hr1G056140.2 | Barley | endoplasmic reticulum, extracellular | 20.25 | 27.97 |
| HORVU7Hr1G100040.1 | Barley | plastid | 26.99 | 21.78 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G061420.4 | EnsemblPlantsGene:HORVU6Hr1G061420 | Gene3D:3.10.120.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0020037 |
| GO:GO:0046872 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | InterPro:IPR001199 | InterPro:IPR036400 |
| PANTHER:PTHR19359 | PANTHER:PTHR19359:SF30 | PFAM:PF00173 | PFscan:PS50255 | ScanProsite:PS00191 | SEG:seg |
| SMART:SM01117 | SUPFAM:SSF55856 | UniParc:UPI000294CD1F | UniProt:M0VGD6 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr6H:+:411344307..411345195
Molecular Weight (calculated)
17406.7 Da
IEP (calculated)
4.988
GRAVY (calculated)
-0.153
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGGKVYSF QEVRKHSERQ DCWLIISGKV YDVTPYMEEH PGGDEVLLAC TGEPSFRLLS RAFSLFRPAG NDGGRAGKDA TADFDDIGHS DAAKELMRQY
101: CVGEVDAATV PAKLGCAVLP AKGAADPAPR ASTGQLLQLA LPLLLVAMAF ALQTFAKTKT ETD
101: CVGEVDAATV PAKLGCAVLP AKGAADPAPR ASTGQLLQLA LPLLLVAMAF ALQTFAKTKT ETD
001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
Arabidopsis Description
CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.