Factsheet for Bra004518.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017502.1-P
Bra022106.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46650.1	Bra017502.1-P	AT5G47120.1	19054355
AT2G46650.1	Bra022106.1-P	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41545	Canola	cytosol	100.0	100.0
CDX80035	Canola	cytosol	99.25	99.25
Bra039268.1-P	Field mustard	cytosol	94.03	94.03
AT2G46650.1	Thale cress	cytosol	85.82	87.12
KRG97223	Soybean	endoplasmic reticulum	50.75	48.23
Bra022660.1-P	Field mustard	cytosol	45.52	45.52
KRH68944	Soybean	cytosol	47.76	45.39
Bra022898.1-P	Field mustard	cytosol	44.03	44.03
Os02t0649800-01	Rice	plasma membrane	44.78	43.48
Bra005564.1-P	Field mustard	cytosol	43.28	43.28
TraesCS6A01G240700.1	Wheat	cytosol, golgi, mitochondrion	45.52	43.26
TraesCS6B01G284000.1	Wheat	cytosol	44.78	42.25
TraesCS6D01G222900.1	Wheat	cytosol	44.78	42.25
Bra036160.1-P	Field mustard	cytosol	44.03	42.14
Zm00001d017425_P001	Maize	cytosol	43.28	41.73
Bra021809.1-P	Field mustard	cytosol	41.04	41.04
Bra037461.1-P	Field mustard	cytosol	41.79	40.58
KRH47845	Soybean	endoplasmic reticulum	42.54	40.14
KRH06410	Soybean	cytosol	43.28	39.73
Bra024721.1-P	Field mustard	cytosol	38.06	37.78
Solyc06g053170.2.1	Tomato	cytosol, plastid	10.45	35.9
Bra029062.1-P	Field mustard	nucleus	31.34	35.59
HORVU6Hr1G061420.4	Barley	cytosol	43.28	35.58
OQU85747	Sorghum	mitochondrion	43.28	27.1
Bra031489.1-P	Field mustard	extracellular, golgi, vacuole	20.15	22.31
Bra027144.1-P	Field mustard	nucleus	19.4	12.94

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EnsemblPlantsGene:Bra004518	EnsemblPlants:Bra004518.1	EnsemblPlants:Bra004518.1-P	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400	UniProt:M4CJY4
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF43
SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00025473C0	SEG:seg	:

Description

AT2G46650 (E=3e-058) B5 #1, ATCB5-C, CB5-C | CB5-C (CYTOCHROME B5 ISOFORM C); heme binding

Coordinates

chrA05:-:595853..596423

Molecular Weight (calculated)

15071.9 Da

IEP (calculated)

5.991

GRAVY (calculated)

-0.304

Length

134 amino acids

Sequence
(BLAST)

001: MANLISFHDV AKHKCKNDCW ILIHGKVYDI SSFIDEHPGG DNVLLAVTGK DASTDFDDVN HSNEAKETMK KYCIGDVDKS TVPVTAKYIP PWEKESTAET
101: TKEETGNKML VYLIPLLILG VAFFLRFYNN KQTS

Best Arabidopsis Sequence Match ( AT2G46650.1 )
(BLAST)

001: MANLISFHDV AKHKCKNDCW ILIHGKVYDI STFMDEHPGG DNVLLAVTGK DASIDFEDVN HSKDAKELMK KYCIGDVDQS TVPVTQQYIP PWEKESTAAE
101: TTKEESGKKL LIYLIPLLIL GVAFALRFYN NK

Arabidopsis Description

CYTB5-CCytochrome B5 isoform C [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNV4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.