Factsheet for Bra022898.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005394.1-P	cytosol, nucleus
Bra017502.1-P	cytosol
Bra022106.1-P	cytosol

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32720.1	Bra005394.1-P	AT2G34770.1	19054355
AT2G32720.1	Bra005394.1-P	AT2G34770.1	22635113
AT2G32720.1	Bra005394.1-P	AT2G34770.1	22635113
AT2G32720.1	Bra017502.1-P	AT5G47120.1	19054355
AT2G32720.1	Bra022106.1-P	AT5G47120.1	19054355
AT2G32720.1	Bra017502.1-P	AT5G47120.1	19054355
AT2G32720.1	Bra022106.1-P	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84725	Canola	cytosol	96.27	96.27
Bra021809.1-P	Field mustard	cytosol	94.03	94.03
Bra005564.1-P	Field mustard	cytosol	92.54	92.54
AT2G32720.1	Thale cress	cytosol	91.79	91.79
Os01t0971500-01	Rice	cytosol, plasma membrane	78.36	77.78
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	78.36	76.64
EES02143	Sorghum	cytosol	76.87	76.3
GSMUA_Achr3P19410_001	Banana	cytosol	76.12	76.12
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	77.61	75.91
TraesCS5D01G152500.1	Wheat	golgi	75.37	75.37
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	75.37	75.37
EES17559	Sorghum	cytosol	74.63	75.19
Os05t0108800-01	Rice	plasma membrane	76.87	75.18
TraesCS5B01G138200.1	Wheat	cytosol, golgi	74.63	74.63
TraesCS5A01G138900.1	Wheat	cytosol, golgi	74.63	74.63
GSMUA_Achr6P06700_001	Banana	cytosol	73.88	73.88
Bra022660.1-P	Field mustard	cytosol	66.42	66.42
Bra037461.1-P	Field mustard	cytosol	67.16	65.22
Bra036160.1-P	Field mustard	cytosol	66.42	63.57
HORVU3Hr1G114360.3	Barley	plasma membrane	77.61	60.12
Bra039268.1-P	Field mustard	cytosol	46.27	46.27
Bra029062.1-P	Field mustard	nucleus	39.55	44.92
Bra004518.1-P	Field mustard	cytosol	44.03	44.03
Solyc12g098320.1.1	Tomato	cytosol	23.13	43.66
PGSC0003DMT400019916	Potato	cytosol	44.03	41.55
Bra024721.1-P	Field mustard	cytosol	41.79	41.48
GSMUA_AchrUn_...	Banana	mitochondrion	67.91	37.14
Bra031489.1-P	Field mustard	extracellular, golgi, vacuole	23.88	26.45
Bra027144.1-P	Field mustard	nucleus	24.63	16.42

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EnsemblPlantsGene:Bra022898	EnsemblPlants:Bra022898.1	EnsemblPlants:Bra022898.1-P	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400	UniProt:M4E298
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF66
SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00025403A3	SEG:seg	:

Description

AT2G32720 (E=5e-059) B5 #4, ATCB5-B, CB5-B | CB5-B (CYTOCHROME B5 ISOFORM B); heme binding

Coordinates

chrA03:-:7640181..7641235

Molecular Weight (calculated)

15102.0 Da

IEP (calculated)

5.583

GRAVY (calculated)

-0.393

Length

134 amino acids

Sequence
(BLAST)

001: MREEAKIFTL SEVSKHNHAN DCWIVISGKV YNVTKFLEDH PGGDEVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKTK YTPPKQPHYN
101: QDKTSEFIIK ILQFLVPLAI LGLAVGIRIY TKAA

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.