Factsheet for GSMUA_Achr3P19410_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...	cytosol, nucleus
GSMUA_Achr11P...	cytosol, nucleus
GSMUA_Achr2P10740_001	cytosol, nucleus
GSMUA_Achr2P10760_001	cytosol, nucleus
GSMUA_Achr6P36970_001	cytosol
GSMUA_Achr7P07470_001	cytosol
GSMUA_Achr8P14090_001	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32720.1	GSMUA_Achr11P...	AT2G34770.1	19054355
AT2G32720.1	GSMUA_Achr11P...	AT2G34770.1	19054355
AT2G32720.1	GSMUA_Achr2P10740_001	AT2G34770.1	19054355
AT2G32720.1	GSMUA_Achr2P10760_001	AT2G34770.1	19054355
AT2G32720.1	GSMUA_Achr8P14090_001	AT2G34770.1	19054355
AT2G32720.1	GSMUA_Achr11P...	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr11P...	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr2P10740_001	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr2P10760_001	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr8P14090_001	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr11P...	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr11P...	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr2P10740_001	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr2P10760_001	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr8P14090_001	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr6P36970_001	AT5G47120.1	19054355
AT2G32720.1	GSMUA_Achr7P07470_001	AT5G47120.1	19054355
AT2G32720.1	GSMUA_Achr6P36970_001	AT5G47120.1	19054355
AT2G32720.1	GSMUA_Achr7P07470_001	AT5G47120.1	19054355
AT5G48810.1	GSMUA_Achr6P36970_001	AT5G47120.1	19054355
AT5G48810.1	GSMUA_Achr7P07470_001	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P06700_001	Banana	cytosol	85.07	85.07
Zm00001d041963_P001	Maize	plasma membrane	83.58	82.96
EES02143	Sorghum	cytosol	82.84	82.22
Os01t0971500-01	Rice	cytosol, plasma membrane	82.84	82.22
Zm00001d011786_P001	Maize	plasma membrane	82.09	81.48
AT2G32720.1	Thale cress	cytosol	80.6	80.6
VIT_07s0005g06290.t01	Wine grape	cytosol	79.1	79.7
TraesCS5A01G138900.1	Wheat	cytosol, golgi	79.1	79.1
EES17559	Sorghum	cytosol	78.36	78.95
Os05t0108800-01	Rice	plasma membrane	80.6	78.83
Bra005564.1-P	Field mustard	cytosol	78.36	78.36
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	78.36	78.36
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	79.85	78.1
TraesCS5B01G138200.1	Wheat	cytosol, golgi	77.61	77.61
CDY23792	Canola	cytosol	77.61	77.61
CDY59638	Canola	cytosol	77.61	77.61
TraesCS5D01G152500.1	Wheat	golgi	77.61	77.61
Zm00001d011081_P001	Maize	plasma membrane, plastid	76.87	77.44
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	79.1	77.37
Bra021809.1-P	Field mustard	cytosol	76.87	76.87
CDX79471	Canola	cytosol	76.87	76.87
CDY19161	Canola	cytosol	76.87	76.87
PGSC0003DMT400051945	Potato	cytosol	75.37	76.52
KRG99574	Soybean	cytosol, endoplasmic reticulum	76.87	76.3
Bra022898.1-P	Field mustard	cytosol	76.12	76.12
CDX84725	Canola	cytosol	76.12	76.12
PGSC0003DMT400003091	Potato	cytosol	76.12	75.56
PGSC0003DMT400045531	Potato	cytosol	74.63	75.19
KRH66053	Soybean	endoplasmic reticulum	75.37	74.81
CDY19937	Canola	cytosol	70.9	67.86
Bra037461.1-P	Field mustard	cytosol	69.4	67.39
Bra036160.1-P	Field mustard	cytosol	70.15	67.14
CDX85364	Canola	cytosol	68.66	66.67
CDX86279	Canola	cytosol	68.66	66.67
CDY12180	Canola	cytosol	77.61	66.67
KRG99780	Soybean	cytosol	67.91	65.94
CDY00045	Canola	cytosol	68.66	65.71
AT5G48810.1	Thale cress	cytosol	67.91	65.0
KRH46744	Soybean	endoplasmic reticulum	67.91	64.08
HORVU3Hr1G114360.3	Barley	plasma membrane	81.34	63.01
GSMUA_Achr1P04070_001	Banana	cytosol	55.97	56.39
Solyc06g053180.2.1	Tomato	plastid	33.58	52.94
GSMUA_Achr4P30410_001	Banana	cytosol, extracellular, mitochondrion	61.19	50.31
GSMUA_Achr11P...	Banana	cytosol	48.51	49.24
GSMUA_Achr2P13570_001	Banana	cytosol	44.78	45.11
PGSC0003DMT400019916	Potato	cytosol	46.27	43.66
GSMUA_AchrUn_...	Banana	mitochondrion	76.12	41.63
GSMUA_Achr4P27140_001	Banana	cytosol	47.01	40.65
GSMUA_Achr6P28600_001	Banana	cytosol, golgi, peroxisome	39.55	39.26
GSMUA_Achr3P16820_001	Banana	cytosol	40.3	39.13
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	39.55	35.57
GSMUA_Achr9P05320_001	Banana	endoplasmic reticulum, plasma membrane	27.61	25.34

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr3G19410_001	EnsemblPlants:GSMUA_Achr3P19410_001	EnsemblPlants:GSMUA_Achr3T19410_001	InterPro:IPR001199	InterPro:IPR036400	UniProt:M0SG07
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF66
SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00029684CA	:	:

Description

Probable cytochrome b5 isoform 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G19410_001]

Coordinates

chr3:-:20761627..20766944

Molecular Weight (calculated)

14815.4 Da

IEP (calculated)

4.390

GRAVY (calculated)

-0.241

Length

134 amino acids

Sequence
(BLAST)

001: MGSDAKVYTL AEVSAHNTPQ DCWLVVNGKV YDVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSTTARA MMDEYYIGEI DTATIPEKVK YTAPNQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVAVRIY TKSE

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.