Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- vacuole 1
- endoplasmic reticulum 1
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400067509 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48810.1 | PGSC0003DMT400067509 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g007930.2.1 | Tomato | cytosol, endoplasmic reticulum, plastid, unclear | 96.3 | 96.3 |
| PGSC0003DMT400045531 | Potato | cytosol | 87.41 | 88.72 |
| PGSC0003DMT400051945 | Potato | cytosol | 83.7 | 85.61 |
| VIT_07s0005g06290.t01 | Wine grape | cytosol | 81.48 | 82.71 |
| GSMUA_Achr3P19410_001 | Banana | cytosol | 75.56 | 76.12 |
| EES02143 | Sorghum | cytosol | 75.56 | 75.56 |
| GSMUA_Achr6P06700_001 | Banana | cytosol | 73.33 | 73.88 |
| TraesCS3A01G524000.2 | Wheat | cytosol, golgi, plastid | 74.07 | 72.99 |
| TraesCS3D01G529500.1 | Wheat | cytosol, golgi, unclear | 74.07 | 72.99 |
| Os01t0971500-01 | Rice | cytosol, plasma membrane | 72.59 | 72.59 |
| TraesCS5A01G138900.1 | Wheat | cytosol, golgi | 71.85 | 72.39 |
| TraesCS5D01G152500.1 | Wheat | golgi | 71.85 | 72.39 |
| EES17559 | Sorghum | cytosol | 71.11 | 72.18 |
| HORVU5Hr1G045040.1 | Barley | cytosol, plasma membrane | 71.11 | 71.64 |
| Os05t0108800-01 | Rice | plasma membrane | 72.59 | 71.53 |
| KRG99780 | Soybean | cytosol | 72.59 | 71.01 |
| TraesCS5B01G138200.1 | Wheat | cytosol, golgi | 70.37 | 70.9 |
| CDX86279 | Canola | cytosol | 71.85 | 70.29 |
| CDX85364 | Canola | cytosol | 71.85 | 70.29 |
| PGSC0003DMT400013956 | Potato | cytosol | 69.63 | 70.15 |
| Bra037461.1-P | Field mustard | cytosol | 71.11 | 69.57 |
| AT5G48810.1 | Thale cress | cytosol | 71.85 | 69.29 |
| KRH46744 | Soybean | endoplasmic reticulum | 71.11 | 67.61 |
| Bra036160.1-P | Field mustard | cytosol | 68.89 | 66.43 |
| CDY19937 | Canola | cytosol | 68.89 | 66.43 |
| CDY00045 | Canola | cytosol | 68.89 | 66.43 |
| PGSC0003DMT400047688 | Potato | cytosol | 65.19 | 65.67 |
| PGSC0003DMT400000362 | Potato | cytosol | 56.3 | 57.58 |
| HORVU3Hr1G114360.3 | Barley | plasma membrane | 73.33 | 57.23 |
| PGSC0003DMT400019916 | Potato | cytosol | 48.15 | 45.77 |
| PGSC0003DMT400072748 | Potato | cytosol | 40.0 | 40.6 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 68.89 | 37.96 |
| PGSC0003DMT400055458 | Potato | cytosol | 36.3 | 33.33 |
| Zm00001d035685_P001 | Maize | mitochondrion | 35.56 | 30.97 |
Protein Annotations
| EntrezGene:102586188 | MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 |
| GO:GO:0046872 | InterPro:IPR001199 | InterPro:IPR036400 | UniProt:M0ZL49 | PFAM:PF00173 | EnsemblPlantsGene:PGSC0003DMG400001228 |
| PGSC:PGSC0003DMG400001228 | EnsemblPlants:PGSC0003DMT400003091 | PRINTS:PR00363 | ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 |
| PANTHER:PTHR19359:SF69 | SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix | UniParc:UPI00029506AF | RefSeq:XP_006356775.1 |
Description
Cytochrome b5 [Source:PGSC_GENE;Acc:PGSC0003DMG400001228]
Coordinates
chr6:-:2165859..2169706
Molecular Weight (calculated)
14899.5 Da
IEP (calculated)
4.585
GRAVY (calculated)
-0.264
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSETKVYTL EEVAPHNNAK DCWLVISGKV YDVTKFLDDH PGGDEVLLAA TGKDATDDFE DVGHSSSARA MLDEYYVGDI DSATIPTKKT YTPPNQPHYN
101: QDKTSEFVIK LLQFLVPLII LGVAVGIRFY TKQSA
101: QDKTSEFVIK LLQFLVPLII LGVAVGIRFY TKQSA
001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
Arabidopsis Description
CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.