Factsheet for HORVU3Hr1G114360.3

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G009740.7	cytosol, nucleus
HORVU5Hr1G100890.11	cytosol, nucleus
HORVU6Hr1G014450.1	cytosol

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32720.1	HORVU0Hr1G009740.7	AT2G34770.1	19054355
AT2G32720.1	HORVU5Hr1G100890.11	AT2G34770.1	19054355
AT2G32720.1	HORVU0Hr1G009740.7	AT2G34770.1	22635113
AT2G32720.1	HORVU5Hr1G100890.11	AT2G34770.1	22635113
AT2G32720.1	HORVU0Hr1G009740.7	AT2G34770.1	22635113
AT2G32720.1	HORVU5Hr1G100890.11	AT2G34770.1	22635113
AT2G32720.1	HORVU6Hr1G014450.1	AT5G47120.1	19054355
AT2G32720.1	HORVU6Hr1G014450.1	AT5G47120.1	19054355
AT5G48810.1	HORVU6Hr1G014450.1	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	74.57	94.16
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	73.99	93.43
EES02143	Sorghum	cytosol	72.25	92.59
Zm00001d041963_P001	Maize	plasma membrane	71.1	91.11
Zm00001d011786_P001	Maize	plasma membrane	69.94	89.63
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	64.16	82.84
GSMUA_Achr3P19410_001	Banana	cytosol	63.01	81.34
AT2G32720.1	Thale cress	cytosol	60.69	78.36
Bra022898.1-P	Field mustard	cytosol	60.12	77.61
PGSC0003DMT400051945	Potato	cytosol	58.96	77.27
CDY23792	Canola	cytosol	59.54	76.87
GSMUA_Achr6P06700_001	Banana	cytosol	59.54	76.87
CDX79471	Canola	cytosol	59.54	76.87
KRG99574	Soybean	cytosol, endoplasmic reticulum	59.54	76.3
CDY19161	Canola	cytosol	58.96	76.12
Bra005564.1-P	Field mustard	cytosol	58.96	76.12
Bra021809.1-P	Field mustard	cytosol	58.96	76.12
CDX84725	Canola	cytosol	58.96	76.12
CDY59638	Canola	cytosol	58.38	75.37
KRH66053	Soybean	endoplasmic reticulum	58.38	74.81
PGSC0003DMT400003091	Potato	cytosol	57.23	73.33
PGSC0003DMT400045531	Potato	cytosol	56.07	72.93
VIT_07s0005g06290.t01	Wine grape	cytosol	55.49	72.18
CDX85364	Canola	cytosol	53.76	67.39
CDX86279	Canola	cytosol	53.18	66.67
Bra037461.1-P	Field mustard	cytosol	52.6	65.94
CDY12180	Canola	cytosol	58.96	65.38
Bra036160.1-P	Field mustard	cytosol	52.02	64.29
CDY19937	Canola	cytosol	52.02	64.29
KRG99780	Soybean	cytosol	50.87	63.77
AT5G48810.1	Thale cress	cytosol	51.45	63.57
CDY00045	Canola	cytosol	50.29	62.14
KRH46744	Soybean	endoplasmic reticulum	50.29	61.27
Solyc06g053180.2.1	Tomato	plastid	25.43	51.76
HORVU1Hr1G047990.4	Barley	plastid	47.98	41.29
GSMUA_AchrUn_...	Banana	mitochondrion	56.65	40.0
PGSC0003DMT400019916	Potato	cytosol	32.37	39.44
HORVU6Hr1G061420.4	Barley	cytosol	32.95	34.97
HORVU5Hr1G095930.3	Barley	endoplasmic reticulum	25.43	29.14
HORVU7Hr1G100040.1	Barley	plastid	32.37	27.72
HORVU5Hr1G056140.2	Barley	endoplasmic reticulum, extracellular	15.61	22.88

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	UniProt:A0A287MSE0	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037
GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G114360	EnsemblPlants:HORVU3Hr1G114360.3	InterPro:IPR001199	InterPro:IPR036400	PFAM:PF00173
PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF66	SMART:SM01117
SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI000B484A77	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr3H:-:690855315..690857339

Molecular Weight (calculated)

18188.7 Da

IEP (calculated)

7.161

GRAVY (calculated)

-0.375

Length

173 amino acids

Sequence
(BLAST)

001: XXXXXXPNKP HHARLTRGPG PGGAPPSPPP RKPAMSSSSS TTKVFTLEEV AKHASKDDCW LVIAGKVYNV TKFLDDHPGG DDVLLSSTAK DATDDFEDVG
101: HSTTARAMMD EYYVGEIDAT TIPTKVKYMP PKQPHYNQDK TPEFIIKILQ FLVPLAILGL AVAVRIYTKS ESV

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.