Factsheet for Zm00001d041963_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23353019
plasma membrane: 27341663

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02143	Sorghum	cytosol	97.78	97.78
Zm00001d011786_P001	Maize	plasma membrane	97.04	97.04
Os01t0971500-01	Rice	cytosol, plasma membrane	92.59	92.59
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	91.85	90.51
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	91.11	89.78
Zm00001d011081_P001	Maize	plasma membrane, plastid	87.41	88.72
TraesCS5D01G152500.1	Wheat	golgi	85.19	85.82
TraesCS5A01G138900.1	Wheat	cytosol, golgi	85.19	85.82
TraesCS5B01G138200.1	Wheat	cytosol, golgi	84.44	85.07
GSMUA_Achr3P19410_001	Banana	cytosol	82.96	83.58
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	82.96	83.58
GSMUA_Achr6P06700_001	Banana	cytosol	79.26	79.85
HORVU3Hr1G114360.3	Barley	plasma membrane	91.11	71.1
Solyc06g053180.2.1	Tomato	plastid	32.59	51.76
Zm00001d032442_P002	Maize	cytosol	51.11	49.64
Zm00001d017425_P001	Maize	cytosol	46.67	45.32
Zm00001d013839_P001	Maize	plasma membrane	58.52	43.41
Zm00001d023978_P001	Maize	cytosol	40.0	41.22
GSMUA_AchrUn_...	Banana	mitochondrion	73.33	40.41
Zm00001d034048_P003	Maize	cytosol	40.0	38.57
Zm00001d013257_P002	Maize	plastid	40.74	36.67
Zm00001d035685_P001	Maize	mitochondrion	40.0	34.84
Zm00001d032266_P001	Maize	endoplasmic reticulum, extracellular	21.48	24.58

Protein Annotations

EntrezGene:100216924	MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	UniProt:B4FKH7	EMBL:BT037615	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	EMBL:EU960300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400
ProteinID:ONM34215.1	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359
PANTHER:PTHR19359:SF66	SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00017B7387	EnsemblPlantsGene:Zm00001d041963
EnsemblPlants:Zm00001d041963_P001	EnsemblPlants:Zm00001d041963_T001	:	:	:	:

Description

Cytochrome B5 isoform D

Coordinates

chr3:-:145908685..145910821

Molecular Weight (calculated)

14861.7 Da

IEP (calculated)

4.929

GRAVY (calculated)

-0.220

Length

135 amino acids

Sequence
(BLAST)

001: MSGSKVYTLE EVAKHNTKDD CWLVIGGKVY NVTKFLEDHP GGDDVLLSST AKDATDDFED VGHSTTARAM MDEYLVGEID AATIPSKVKY TPPKQPHYNQ
101: DKTPEFVIKI LQFLVPLAIL GLAVAVRIYT KSESA

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.