Factsheet for Zm00001d035685_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015091_P003
Zm00001d045618_P001
Zm00001d053952_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48810.1	Zm00001d015091_P003	AT5G47120.1	19054355
AT5G48810.1	Zm00001d045618_P001	AT5G47120.1	19054355
AT5G48810.1	Zm00001d053952_P001	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011081_P001	Maize	plasma membrane, plastid	36.13	42.11
Zm00001d041963_P001	Maize	plasma membrane	34.84	40.0
Zm00001d011786_P001	Maize	plasma membrane	34.84	40.0
Solyc06g083440.2.1	Tomato	cytosol	34.19	39.85
PGSC0003DMT400051945	Potato	cytosol	33.55	39.39
PGSC0003DMT400045531	Potato	cytosol	32.26	37.59
VIT_07s0005g06290.t01	Wine grape	cytosol	31.61	36.84
KRG99574	Soybean	cytosol, endoplasmic reticulum	31.61	36.3
KRH66053	Soybean	endoplasmic reticulum	31.61	36.3
Solyc09g061230.2.1	Tomato	cytosol	30.97	36.09
Solyc06g007930.2.1	Tomato	cytosol, endoplasmic reticulum, plastid, unclear	30.97	35.56
PGSC0003DMT400003091	Potato	cytosol	30.97	35.56
KRG99780	Soybean	cytosol	30.97	34.78
CDX85364	Canola	cytosol	30.32	34.06
Bra037461.1-P	Field mustard	cytosol	29.68	33.33
CDX86279	Canola	cytosol	29.68	33.33
Bra036160.1-P	Field mustard	cytosol	29.68	32.86
CDY00045	Canola	cytosol	29.68	32.86
CDY19937	Canola	cytosol	29.68	32.86
AT5G48810.1	Thale cress	cytosol	29.68	32.86
KRH46744	Soybean	endoplasmic reticulum	29.68	32.39
Zm00001d017425_P001	Maize	cytosol	26.45	29.5
Zm00001d023978_P001	Maize	cytosol	23.87	28.24
Zm00001d034048_P003	Maize	cytosol	24.52	27.14
Zm00001d013257_P002	Maize	plastid	24.52	25.33
Zm00001d013839_P001	Maize	plasma membrane	26.45	22.53
Zm00001d032442_P002	Maize	cytosol	20.0	22.3
Zm00001d032266_P001	Maize	endoplasmic reticulum, extracellular	14.84	19.49

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	UniProt:A0A1D6LHW0	ProteinID:AQK79455.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf
InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199
InterPro:IPR036400	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359
PANTHER:PTHR19359:SF66	SMART:SM01117	SUPFAM:SSF55856	UniParc:UPI000842F111	EnsemblPlantsGene:Zm00001d035685	EnsemblPlants:Zm00001d035685_P001
EnsemblPlants:Zm00001d035685_T001	SEG:seg	:	:	:	:

Description

Cytochrome B5 isoform D

Coordinates

chr6:-:41091646..41097542

Molecular Weight (calculated)

16949.0 Da

IEP (calculated)

9.459

GRAVY (calculated)

-0.627

Length

155 amino acids

Sequence
(BLAST)

001: MARGILARPT RFEQPRRSCS RLCMSRRTNT FDPARVASVR ARPWRGRPGH GPLTCSPAAS RRDGVAAIPR GLRSGSARPR TAQPWPPLAR SVAKLPSCEV
101: YDVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGGHSNTAR AMMDEYLVGE VDDPF

Best Arabidopsis Sequence Match ( AT2G32720.2 )
(BLAST)

001: MYTEQSFLSS SEDPKCISGL GCWYSNLFQV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.