Factsheet for Bra036160.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017502.1-P
Bra022106.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48810.1	Bra017502.1-P	AT5G47120.1	19054355
AT5G48810.1	Bra022106.1-P	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19937	Canola	cytosol	99.29	99.29
Bra037461.1-P	Field mustard	cytosol	89.29	90.58
AT5G48810.1	Thale cress	cytosol	81.43	81.43
PGSC0003DMT400045531	Potato	cytosol	70.71	74.44
Solyc09g061230.2.1	Tomato	cytosol	70.0	73.68
GSMUA_Achr3P19410_001	Banana	cytosol	67.14	70.15
VIT_07s0005g06290.t01	Wine grape	cytosol	66.43	69.92
TraesCS5D01G152500.1	Wheat	golgi	66.43	69.4
PGSC0003DMT400051945	Potato	cytosol	65.0	68.94
Solyc06g007930.2.1	Tomato	cytosol, endoplasmic reticulum, plastid, unclear	66.43	68.89
PGSC0003DMT400003091	Potato	cytosol	66.43	68.89
TraesCS5A01G138900.1	Wheat	cytosol, golgi	65.71	68.66
GSMUA_Achr6P06700_001	Banana	cytosol	65.71	68.66
Solyc06g083440.2.1	Tomato	cytosol	65.0	68.42
EES02143	Sorghum	cytosol	65.71	68.15
KRG99574	Soybean	cytosol, endoplasmic reticulum	65.71	68.15
Bra005564.1-P	Field mustard	cytosol	65.0	67.91
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	65.0	67.91
EES17559	Sorghum	cytosol	64.29	67.67
KRH66053	Soybean	endoplasmic reticulum	65.0	67.41
Os01t0971500-01	Rice	cytosol, plasma membrane	65.0	67.41
Os05t0108800-01	Rice	plasma membrane	65.71	67.15
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	65.0	66.42
Bra022898.1-P	Field mustard	cytosol	63.57	66.42
TraesCS5B01G138200.1	Wheat	cytosol, golgi	63.57	66.42
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	64.29	65.69
Bra021809.1-P	Field mustard	cytosol	62.86	65.67
Bra022660.1-P	Field mustard	cytosol	58.57	61.19
HORVU3Hr1G114360.3	Barley	plasma membrane	64.29	52.02
Bra039268.1-P	Field mustard	cytosol	45.0	47.01
Bra004518.1-P	Field mustard	cytosol	42.14	44.03
Bra029062.1-P	Field mustard	nucleus	35.0	41.53
Bra024721.1-P	Field mustard	cytosol	39.29	40.74
GSMUA_AchrUn_...	Banana	mitochondrion	57.86	33.06
Zm00001d035685_P001	Maize	mitochondrion	32.86	29.68
Bra031489.1-P	Field mustard	extracellular, golgi, vacuole	22.14	25.62
Bra027144.1-P	Field mustard	nucleus	20.0	13.93

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EnsemblPlantsGene:Bra036160	EnsemblPlants:Bra036160.1	EnsemblPlants:Bra036160.1-P	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488	GO:GO:0020037	GO:GO:0046872
InterPro:IPR001199	InterPro:IPR036400	UniProt:M4F506	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191
PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF69	SMART:SM01117	SUPFAM:SSF55856	UniParc:UPI0002541EC0
SEG:seg	:	:	:	:	:

Description

AT5G48810 (E=4e-054) ATB5-B, B5 #3, ATCB5-D, CB5-D | CB5-D (CYTOCHROME B5 ISOFORM D); heme binding

Coordinates

chrA09:+:2387140..2387920

Molecular Weight (calculated)

15057.7 Da

IEP (calculated)

4.542

GRAVY (calculated)

-0.236

Length

140 amino acids

Sequence
(BLAST)

001: MGGGGKVYTL AEVSQHTTNQ DCWIVIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DTATVPAKTK FVPPSPPKQT
101: ESNQSKSSDF LVKILQFLVP LLILGLALGV RSYTKTPSSS

Best Arabidopsis Sequence Match ( AT5G48810.1 )
(BLAST)

001: MGGDGKVFTL SEVSQHSSAK DCWIVIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DTATVPVKAK FVPPTSTKAV
101: ATQDKSSDFV IKLLQFLVPL LILGLAFGIR YYTKTKAPSS

Arabidopsis Description

CYTB5-DCytochrome B5 isoform D [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.