Factsheet for Bra024721.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017502.1-P
Bra022106.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26340.1	Bra017502.1-P	AT5G47120.1	19054355
AT1G26340.1	Bra022106.1-P	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16153	Canola	cytosol	100.0	100.0
CDX85016	Canola	cytosol	98.52	98.52
AT1G26340.1	Thale cress	cytosol	86.67	86.67
PGSC0003DMT400072748	Potato	cytosol	68.15	69.17
Solyc05g012080.2.1	Tomato	cytosol, plastid	67.41	68.42
VIT_01s0011g00210.t01	Wine grape	cytosol	65.93	66.42
KRH53553	Soybean	cytosol	59.26	66.12
TraesCS5B01G396800.1	Wheat	cytosol	63.7	63.7
EER93435	Sorghum	cytosol	60.74	61.65
TraesCS5D01G401800.1	Wheat	cytosol	60.74	60.74
TraesCS5A01G391900.1	Wheat	cytosol	60.74	60.74
GSMUA_Achr2P13570_001	Banana	cytosol	57.04	57.89
Zm00001d034048_P003	Maize	cytosol	57.78	55.71
Zm00001d013257_P002	Maize	plastid	59.26	53.33
HORVU5Hr1G095930.3	Barley	endoplasmic reticulum	51.11	45.7
Bra022660.1-P	Field mustard	cytosol	45.19	45.52
Bra029062.1-P	Field mustard	nucleus	37.78	43.22
Bra005564.1-P	Field mustard	cytosol	42.22	42.54
Bra022898.1-P	Field mustard	cytosol	41.48	41.79
Bra021809.1-P	Field mustard	cytosol	40.74	41.04
Bra036160.1-P	Field mustard	cytosol	40.74	39.29
Bra037461.1-P	Field mustard	cytosol	40.0	39.13
Bra039268.1-P	Field mustard	cytosol	38.52	38.81
Bra004518.1-P	Field mustard	cytosol	37.78	38.06
Bra031489.1-P	Field mustard	extracellular, golgi, vacuole	27.41	30.58
Bra027144.1-P	Field mustard	nucleus	25.19	16.92

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EnsemblPlantsGene:Bra024721	EnsemblPlants:Bra024721.1	EnsemblPlants:Bra024721.1-P	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009536	GO:GO:0009707	GO:GO:0010319	GO:GO:0016020
GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400	UniProt:M4E7G6
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF25
SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00025427A2	SEG:seg	:

Description

AT1G26340 (E=2e-058) B5 #6, ATCB5-A, CB5-A | CB5-A (CYTOCHROME B5 ISOFORM A); heme binding

Coordinates

chrA09:+:23342598..23343303

Molecular Weight (calculated)

15252.1 Da

IEP (calculated)

4.312

GRAVY (calculated)

-0.322

Length

135 amino acids

Sequence
(BLAST)

001: MPTLTKIYSM EEVAAHNKQD DCWIVIDGKV YDVTPYMDEH PGGDDVLLAV TGKDATDEFE DAGHSKTARE LMEEYFIGEL DEASLPEIPE LKIYKKEDPK
101: DSVQKLVDLT KQYWLVPVSV ITISVAVSVL FSRKK

Best Arabidopsis Sequence Match ( AT1G26340.1 )
(BLAST)

001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT

Arabidopsis Description

CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.