CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY25984
CDY28973
CDY40569
CDY43441

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26340.1	CDY25984	AT5G47120.1	19054355
AT1G26340.1	CDY28973	AT5G47120.1	19054355
AT1G26340.1	CDY40569	AT5G47120.1	19054355
AT1G26340.1	CDY43441	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024721.1-P	Field mustard	cytosol	100.0	100.0
CDX85016	Canola	cytosol	98.52	98.52
AT1G26340.1	Thale cress	cytosol	86.67	86.67
PGSC0003DMT400072748	Potato	cytosol	68.15	69.17
Solyc05g012080.2.1	Tomato	cytosol, plastid	67.41	68.42
VIT_01s0011g00210.t01	Wine grape	cytosol	65.93	66.42
KRH53553	Soybean	cytosol	59.26	66.12
TraesCS5B01G396800.1	Wheat	cytosol	63.7	63.7
EER93435	Sorghum	cytosol	60.74	61.65
TraesCS5D01G401800.1	Wheat	cytosol	60.74	60.74
TraesCS5A01G391900.1	Wheat	cytosol	60.74	60.74
GSMUA_Achr2P13570_001	Banana	cytosol	57.04	57.89
Zm00001d034048_P003	Maize	cytosol	57.78	55.71
Zm00001d013257_P002	Maize	plastid	59.26	53.33
HORVU5Hr1G095930.3	Barley	endoplasmic reticulum	51.11	45.7
CDX96233	Canola	cytosol	45.19	45.52
CDY28830	Canola	cytosol	45.19	45.52
CDY47080	Canola	cytosol	43.7	44.03
CDY47078	Canola	nucleus	37.78	43.22
CDY59638	Canola	cytosol	41.48	41.79
CDX79471	Canola	cytosol	41.48	41.79
CDX84725	Canola	cytosol	40.74	41.04
CDY19161	Canola	cytosol	40.74	41.04
CDY23792	Canola	cytosol	40.74	41.04
CDY27310	Canola	cytosol	39.26	39.55
CDY61721	Canola	cytosol	39.26	39.55
CDY19937	Canola	cytosol	40.74	39.29
CDX86279	Canola	cytosol	40.0	39.13
CDY00045	Canola	cytosol	40.0	38.57
CDY14370	Canola	cytosol	44.44	38.46
CDX85364	Canola	cytosol	39.26	38.41
CDY41545	Canola	cytosol	37.78	38.06
CDX80035	Canola	cytosol	37.04	37.31
CDY12180	Canola	cytosol	41.48	35.9
CDY34133	Canola	endoplasmic reticulum, extracellular, golgi	29.63	32.79
CDY24550	Canola	extracellular, golgi, vacuole	28.89	32.23
CDY20247	Canola	mitochondrion	44.44	31.58
CDY61511	Canola	endoplasmic reticulum, golgi	19.26	30.95
CDY44610	Canola	endoplasmic reticulum	19.26	30.95
CDY46984	Canola	endoplasmic reticulum	29.63	30.3

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	GO:A0A078FUS9	UniProt:A0A078FUS9	EnsemblPlants:CDY16153	ProteinID:CDY16153
ProteinID:CDY16153.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00090591001
InterPro:IPR001199	InterPro:IPR036400	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255
PANTHER:PTHR19359	PANTHER:PTHR19359:SF25	SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00025427A2
SEG:seg	:	:	:	:	:

Description

BnaA09g28870DBnaA09g28870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUS9]

Coordinates

chrLK032061:+:205455..206476

Molecular Weight (calculated)

15252.1 Da

IEP (calculated)

4.312

GRAVY (calculated)

-0.322

Length

135 amino acids

Sequence
(BLAST)

001: MPTLTKIYSM EEVAAHNKQD DCWIVIDGKV YDVTPYMDEH PGGDDVLLAV TGKDATDEFE DAGHSKTARE LMEEYFIGEL DEASLPEIPE LKIYKKEDPK
101: DSVQKLVDLT KQYWLVPVSV ITISVAVSVL FSRKK

Best Arabidopsis Sequence Match ( AT1G26340.1 )
(BLAST)

001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT

Arabidopsis Description

CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.