Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96233 | Canola | cytosol | 78.36 | 78.36 |
| CDY28830 | Canola | cytosol | 78.36 | 78.36 |
| CDY14370 | Canola | cytosol | 79.85 | 68.59 |
| CDY23792 | Canola | cytosol | 60.45 | 60.45 |
| CDX84725 | Canola | cytosol | 59.7 | 59.7 |
| CDY19161 | Canola | cytosol | 59.7 | 59.7 |
| CDX79471 | Canola | cytosol | 59.7 | 59.7 |
| CDY59638 | Canola | cytosol | 58.96 | 58.96 |
| CDX86279 | Canola | cytosol | 60.45 | 58.7 |
| CDX85364 | Canola | cytosol | 59.7 | 57.97 |
| PGSC0003DMT400000362 | Potato | cytosol | 55.97 | 56.82 |
| CDY47078 | Canola | nucleus | 50.0 | 56.78 |
| CDY19937 | Canola | cytosol | 58.96 | 56.43 |
| CDY20247 | Canola | mitochondrion | 79.1 | 55.79 |
| CDY00045 | Canola | cytosol | 56.72 | 54.29 |
| CDY12180 | Canola | cytosol | 58.96 | 50.64 |
| CDY27310 | Canola | cytosol | 49.25 | 49.25 |
| CDY61721 | Canola | cytosol | 49.25 | 49.25 |
| CDX80035 | Canola | cytosol | 47.76 | 47.76 |
| CDY41545 | Canola | cytosol | 47.01 | 47.01 |
| CDY16153 | Canola | cytosol | 44.03 | 43.7 |
| CDX85016 | Canola | cytosol | 43.28 | 42.96 |
| CDY34133 | Canola | endoplasmic reticulum, extracellular, golgi | 24.63 | 27.05 |
| CDY24550 | Canola | extracellular, golgi, vacuole | 23.88 | 26.45 |
| CDY44610 | Canola | endoplasmic reticulum | 16.42 | 26.19 |
| CDY61511 | Canola | endoplasmic reticulum, golgi | 16.42 | 26.19 |
| CDY46984 | Canola | endoplasmic reticulum | 25.37 | 25.76 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | GO:A0A078I850 | UniProt:A0A078I850 | EnsemblPlants:CDY47080 | ProteinID:CDY47080 |
| ProteinID:CDY47080.1 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00086702001 |
| InterPro:IPR001199 | InterPro:IPR036400 | PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 | PFscan:PS50255 |
| PANTHER:PTHR19359 | PANTHER:PTHR19359:SF22 | SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix | UniParc:UPI0004EDCDF1 |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g12180DBnaA03g12180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I850]
Coordinates
chrLK032696:+:161482..162395
Molecular Weight (calculated)
15104.1 Da
IEP (calculated)
4.724
GRAVY (calculated)
-0.087
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDKVFTFD EVSQHNKRDD CWLIISGKVY DVTPFMDVHP GGDDVLFAVA GKDATIDFED VGHSEDAREL MKEYYIGGID SSTTVPAART YVAPVQPTFN
101: QDKTPRFIIK ILQFLLPILI LGLALFVRQY TKKE
101: QDKTPRFIIK ILQFLLPILI LGLALFVRQY TKKE
001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
Arabidopsis Description
CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.