Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48810.1 | CDY25984 | AT5G47120.1 | 19054355 |
| AT5G48810.1 | CDY28973 | AT5G47120.1 | 19054355 |
| AT5G48810.1 | CDY40569 | AT5G47120.1 | 19054355 |
| AT5G48810.1 | CDY43441 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86279 | Canola | cytosol | 97.83 | 97.83 |
| Bra037461.1-P | Field mustard | cytosol | 97.1 | 97.1 |
| CDY00045 | Canola | cytosol | 89.86 | 88.57 |
| CDY19937 | Canola | cytosol | 89.86 | 88.57 |
| AT5G48810.1 | Thale cress | cytosol | 84.78 | 83.57 |
| PGSC0003DMT400045531 | Potato | cytosol | 71.74 | 74.44 |
| Solyc09g061230.2.1 | Tomato | cytosol | 71.01 | 73.68 |
| PGSC0003DMT400003091 | Potato | cytosol | 70.29 | 71.85 |
| Solyc06g007930.2.1 | Tomato | cytosol, endoplasmic reticulum, plastid, unclear | 69.57 | 71.11 |
| PGSC0003DMT400051945 | Potato | cytosol | 67.39 | 70.45 |
| Solyc06g083440.2.1 | Tomato | cytosol | 67.39 | 69.92 |
| TraesCS5D01G152500.1 | Wheat | golgi | 67.39 | 69.4 |
| TraesCS5A01G138900.1 | Wheat | cytosol, golgi | 66.67 | 68.66 |
| GSMUA_Achr3P19410_001 | Banana | cytosol | 66.67 | 68.66 |
| Os05t0108800-01 | Rice | plasma membrane | 68.12 | 68.61 |
| EES17559 | Sorghum | cytosol | 65.94 | 68.42 |
| VIT_07s0005g06290.t01 | Wine grape | cytosol | 65.94 | 68.42 |
| Os01t0971500-01 | Rice | cytosol, plasma membrane | 66.67 | 68.15 |
| KRG99574 | Soybean | cytosol, endoplasmic reticulum | 66.67 | 68.15 |
| HORVU5Hr1G045040.1 | Barley | cytosol, plasma membrane | 65.94 | 67.91 |
| CDY59638 | Canola | cytosol | 65.94 | 67.91 |
| TraesCS3A01G524000.2 | Wheat | cytosol, golgi, plastid | 67.39 | 67.88 |
| KRH66053 | Soybean | endoplasmic reticulum | 65.94 | 67.41 |
| EES02143 | Sorghum | cytosol | 65.94 | 67.41 |
| CDY23792 | Canola | cytosol | 65.22 | 67.16 |
| CDY19161 | Canola | cytosol | 65.22 | 67.16 |
| CDX84725 | Canola | cytosol | 65.22 | 67.16 |
| TraesCS5B01G138200.1 | Wheat | cytosol, golgi | 65.22 | 67.16 |
| CDX79471 | Canola | cytosol | 65.22 | 67.16 |
| TraesCS3D01G529500.1 | Wheat | cytosol, golgi, unclear | 66.67 | 67.15 |
| GSMUA_Achr6P06700_001 | Banana | cytosol | 61.59 | 63.43 |
| CDX96233 | Canola | cytosol | 61.59 | 63.43 |
| CDY28830 | Canola | cytosol | 61.59 | 63.43 |
| CDY47080 | Canola | cytosol | 57.97 | 59.7 |
| CDY12180 | Canola | cytosol | 65.94 | 58.33 |
| CDY14370 | Canola | cytosol | 61.59 | 54.49 |
| HORVU3Hr1G114360.3 | Barley | plasma membrane | 67.39 | 53.76 |
| CDY27310 | Canola | cytosol | 44.93 | 46.27 |
| CDY61721 | Canola | cytosol | 44.93 | 46.27 |
| CDY20247 | Canola | mitochondrion | 61.59 | 44.74 |
| CDX80035 | Canola | cytosol | 42.03 | 43.28 |
| CDY47078 | Canola | nucleus | 36.96 | 43.22 |
| CDY41545 | Canola | cytosol | 41.3 | 42.54 |
| CDY16153 | Canola | cytosol | 38.41 | 39.26 |
| CDX85016 | Canola | cytosol | 38.41 | 39.26 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 57.97 | 32.65 |
| Zm00001d035685_P001 | Maize | mitochondrion | 34.06 | 30.32 |
| CDY24550 | Canola | extracellular, golgi, vacuole | 21.01 | 23.97 |
| CDY34133 | Canola | endoplasmic reticulum, extracellular, golgi | 21.01 | 23.77 |
| CDY46984 | Canola | endoplasmic reticulum | 22.46 | 23.48 |
| CDY61511 | Canola | endoplasmic reticulum, golgi | 13.04 | 21.43 |
| CDY44610 | Canola | endoplasmic reticulum | 13.04 | 21.43 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | GO:A0A078DAQ9 | EnsemblPlants:CDX85364 | ProteinID:CDX85364 | ProteinID:CDX85364.1 |
| InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0020037 |
| EnsemblPlantsGene:GSBRNA2T00143036001 | InterPro:IPR001199 | InterPro:IPR036400 | PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 |
| PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF69 | SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix |
| UniParc:UPI0004EDB17F | SEG:seg | : | : | : | : |
Description
BnaC07g26750D
Coordinates
chrLK031841:+:1404774..1405869
Molecular Weight (calculated)
14973.5 Da
IEP (calculated)
4.335
GRAVY (calculated)
-0.304
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGDGKVFTL EEVSQHTSNQ DCWIAIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DSATVPTKTK FVPPPSNQTQ
101: SNQNKSSDFL IKILQFLVPL LILGLALGIR SYTKSPSS
101: SNQNKSSDFL IKILQFLVPL LILGLALGIR SYTKSPSS
001: MGGDGKVFTL SEVSQHSSAK DCWIVIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DTATVPVKAK FVPPTSTKAV
101: ATQDKSSDFV IKLLQFLVPL LILGLAFGIR YYTKTKAPSS
101: ATQDKSSDFV IKLLQFLVPL LILGLAFGIR YYTKTKAPSS
Arabidopsis Description
CYTB5-DCytochrome B5 isoform D [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWT2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.