Factsheet for HORVU5Hr1G045040.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G009740.7	cytosol, nucleus
HORVU5Hr1G100890.11	cytosol, nucleus
HORVU6Hr1G014450.1	cytosol

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32720.1	HORVU0Hr1G009740.7	AT2G34770.1	19054355
AT2G32720.1	HORVU5Hr1G100890.11	AT2G34770.1	19054355
AT2G32720.1	HORVU0Hr1G009740.7	AT2G34770.1	22635113
AT2G32720.1	HORVU5Hr1G100890.11	AT2G34770.1	22635113
AT2G32720.1	HORVU0Hr1G009740.7	AT2G34770.1	22635113
AT2G32720.1	HORVU5Hr1G100890.11	AT2G34770.1	22635113
AT2G32720.1	HORVU6Hr1G014450.1	AT5G47120.1	19054355
AT2G32720.1	HORVU6Hr1G014450.1	AT5G47120.1	19054355
AT5G48810.1	HORVU6Hr1G014450.1	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G138900.1	Wheat	cytosol, golgi	97.76	97.76
TraesCS5B01G138200.1	Wheat	cytosol, golgi	96.27	96.27
TraesCS5D01G152500.1	Wheat	golgi	94.78	94.78
Os01t0971500-01	Rice	cytosol, plasma membrane	88.81	88.15
Zm00001d041963_P001	Maize	plasma membrane	83.58	82.96
Zm00001d011786_P001	Maize	plasma membrane	82.84	82.22
EES02143	Sorghum	cytosol	82.84	82.22
GSMUA_Achr3P19410_001	Banana	cytosol	78.36	78.36
VIT_07s0005g06290.t01	Wine grape	cytosol	76.12	76.69
KRG99574	Soybean	cytosol, endoplasmic reticulum	76.87	76.3
PGSC0003DMT400051945	Potato	cytosol	74.63	75.76
Bra005564.1-P	Field mustard	cytosol	75.37	75.37
Bra022898.1-P	Field mustard	cytosol	75.37	75.37
KRH66053	Soybean	endoplasmic reticulum	75.37	74.81
AT2G32720.1	Thale cress	cytosol	74.63	74.63
CDY59638	Canola	cytosol	74.63	74.63
CDY23792	Canola	cytosol	74.63	74.63
CDX79471	Canola	cytosol	74.63	74.63
CDX84725	Canola	cytosol	74.63	74.63
CDY19161	Canola	cytosol	73.88	73.88
Bra021809.1-P	Field mustard	cytosol	73.88	73.88
PGSC0003DMT400045531	Potato	cytosol	73.13	73.68
GSMUA_Achr6P06700_001	Banana	cytosol	73.13	73.13
PGSC0003DMT400003091	Potato	cytosol	71.64	71.11
CDX86279	Canola	cytosol	67.91	65.94
CDX85364	Canola	cytosol	67.91	65.94
Bra037461.1-P	Field mustard	cytosol	67.16	65.22
Bra036160.1-P	Field mustard	cytosol	67.91	65.0
CDY19937	Canola	cytosol	67.91	65.0
KRG99780	Soybean	cytosol	66.42	64.49
CDY00045	Canola	cytosol	67.16	64.29
HORVU3Hr1G114360.3	Barley	plasma membrane	82.84	64.16
CDY12180	Canola	cytosol	74.63	64.1
AT5G48810.1	Thale cress	cytosol	64.93	62.14
KRH46744	Soybean	endoplasmic reticulum	65.67	61.97
Solyc06g053180.2.1	Tomato	plastid	29.85	47.06
PGSC0003DMT400019916	Potato	cytosol	43.28	40.85
GSMUA_AchrUn_...	Banana	mitochondrion	70.15	38.37
HORVU1Hr1G047990.4	Barley	plastid	55.97	37.31
HORVU6Hr1G061420.4	Barley	cytosol	41.79	34.36
HORVU5Hr1G056140.2	Barley	endoplasmic reticulum, extracellular	24.63	27.97
HORVU5Hr1G095930.3	Barley	endoplasmic reticulum	31.34	27.81
HORVU7Hr1G100040.1	Barley	plastid	38.81	25.74

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EMBL:AK360930	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS
UniProt:F2DAL6	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0020037	GO:GO:0046872	EnsemblPlantsGene:HORVU5Hr1G045040	EnsemblPlants:HORVU5Hr1G045040.1	InterPro:IPR001199	InterPro:IPR036400
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF66
SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00020062E1	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DAL6]

Coordinates

chrchr5H:-:348601974..348604537

Molecular Weight (calculated)

14849.6 Da

IEP (calculated)

4.751

GRAVY (calculated)

-0.266

Length

134 amino acids

Sequence
(BLAST)

001: MSKAALTLEE VSKHNTKDDC WLIIAGKVYD VTKFLEDHPG GDDVLLSSTG KDATDDFEDV GHSTTARAML DEFYVGDVDT TTIPARTKYT PPKQPHYNQD
101: KTPEFIIKIL QFLVPLAILG LAVAIRMYTK SESA

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.