Factsheet for Solyc06g053180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P19410_001	Banana	cytosol	52.94	33.58
Os01t0971500-01	Rice	cytosol, plasma membrane	52.94	33.33
EES17559	Sorghum	cytosol	51.76	33.08
Zm00001d011081_P001	Maize	plasma membrane, plastid	51.76	33.08
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	52.94	32.85
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	52.94	32.85
Zm00001d041963_P001	Maize	plasma membrane	51.76	32.59
EES02143	Sorghum	cytosol	51.76	32.59
Zm00001d011786_P001	Maize	plasma membrane	51.76	32.59
Os05t0108800-01	Rice	plasma membrane	51.76	32.12
Solyc09g061230.2.1	Tomato	cytosol	49.41	31.58
TraesCS5D01G152500.1	Wheat	golgi	49.41	31.34
TraesCS5A01G138900.1	Wheat	cytosol, golgi	48.24	30.6
TraesCS5B01G138200.1	Wheat	cytosol, golgi	48.24	30.6
Solyc06g007930.2.1	Tomato	cytosol, endoplasmic reticulum, plastid, unclear	48.24	30.37
Solyc06g083440.2.1	Tomato	cytosol	47.06	30.08
GSMUA_Achr6P06700_001	Banana	cytosol	47.06	29.85
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	47.06	29.85
Solyc03g082600.2.1	Tomato	plastid	63.53	28.42
HORVU3Hr1G114360.3	Barley	plasma membrane	51.76	25.43
GSMUA_AchrUn_...	Banana	mitochondrion	43.53	15.1
Solyc05g012080.2.1	Tomato	cytosol, plastid	20.0	12.78
Solyc04g078140.2.1	Tomato	cytosol	18.82	10.81
Solyc12g008470.1.1	Tomato	mitochondrion	9.41	9.52
Solyc06g053170.2.1	Tomato	cytosol, plastid	2.35	5.13
Solyc12g098320.1.1	Tomato	cytosol	3.53	4.23

Protein Annotations

EnsemblPlants:Solyc06g053180.2.1	EnsemblPlantsGene:Solyc06g053180.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR19359
PANTHER:PTHR19359:SF22	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002767490	UniProt:K4C605	MapMan:21.9.1.7.1.3

Description

No Description!

Coordinates

chr6:+:35916968..35918110

Molecular Weight (calculated)

10051.2 Da

IEP (calculated)

9.030

GRAVY (calculated)

-0.440

Length

85 amino acids

Sequence
(BLAST)

1: MKHRRSCDSW SEWHTSHFAR EMMDKYYIGD IDQSTVPLKR AYIPPEQAPY NPDKTSEFVI KILQILVPLL ILGLAFAVRH YTKEK

Best Arabidopsis Sequence Match ( AT2G32720.2 )
(BLAST)

001: MYTEQSFLSS SEDPKCISGL GCWYSNLFQV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.