CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89024	cytosol
EER93353	cytosol, nucleus
EES04425	cytosol
EES16419	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32720.1	EER93353	AT2G34770.1	19054355
AT2G32720.1	EES16419	AT2G34770.1	19054355
AT2G32720.1	EER93353	AT2G34770.1	22635113
AT2G32720.1	EES16419	AT2G34770.1	22635113
AT2G32720.1	EER93353	AT2G34770.1	22635113
AT2G32720.1	EES16419	AT2G34770.1	22635113
AT2G32720.1	EER89024	AT5G47120.1	19054355
AT2G32720.1	EES04425	AT5G47120.1	19054355
AT2G32720.1	EER89024	AT5G47120.1	19054355
AT2G32720.1	EES04425	AT5G47120.1	19054355
AT5G48810.1	EER89024	AT5G47120.1	19054355
AT5G48810.1	EES04425	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011081_P001	Maize	plasma membrane, plastid	96.99	96.99
EES02143	Sorghum	cytosol	89.47	88.15
Os05t0108800-01	Rice	plasma membrane	89.47	86.86
GSMUA_Achr3P19410_001	Banana	cytosol	78.95	78.36
PGSC0003DMT400051945	Potato	cytosol	75.94	76.52
GSMUA_Achr6P06700_001	Banana	cytosol	76.69	76.12
VIT_07s0005g06290.t01	Wine grape	cytosol	75.94	75.94
Bra005564.1-P	Field mustard	cytosol	75.94	75.37
CDY59638	Canola	cytosol	75.94	75.37
Bra022898.1-P	Field mustard	cytosol	75.19	74.63
KRG99574	Soybean	cytosol, endoplasmic reticulum	75.19	74.07
CDX79471	Canola	cytosol	74.44	73.88
AT2G32720.1	Thale cress	cytosol	74.44	73.88
CDY23792	Canola	cytosol	74.44	73.88
CDX84725	Canola	cytosol	73.68	73.13
Bra021809.1-P	Field mustard	cytosol	73.68	73.13
CDY19161	Canola	cytosol	73.68	73.13
KRH66053	Soybean	endoplasmic reticulum	73.68	72.59
PGSC0003DMT400045531	Potato	cytosol	72.18	72.18
PGSC0003DMT400003091	Potato	cytosol	72.18	71.11
CDX85364	Canola	cytosol	68.42	65.94
CDX86279	Canola	cytosol	67.67	65.22
CDY12180	Canola	cytosol	75.94	64.74
Bra037461.1-P	Field mustard	cytosol	66.92	64.49
CDY19937	Canola	cytosol	67.67	64.29
Bra036160.1-P	Field mustard	cytosol	67.67	64.29
KRG99780	Soybean	cytosol	64.66	62.32
AT5G48810.1	Thale cress	cytosol	65.41	62.14
CDY00045	Canola	cytosol	65.41	62.14
EER91363	Sorghum	cytosol	62.41	61.94
KRH46744	Soybean	endoplasmic reticulum	64.66	60.56
Solyc06g053180.2.1	Tomato	plastid	33.08	51.76
EES15848	Sorghum	cytosol	47.37	42.86
PGSC0003DMT400019916	Potato	cytosol	42.86	40.14
EER93435	Sorghum	cytosol	39.85	39.85
GSMUA_AchrUn_...	Banana	mitochondrion	72.18	39.18
OQU85747	Sorghum	mitochondrion	46.62	28.97
OQU80382	Sorghum	extracellular, vacuole	24.81	27.97
EER98759	Sorghum	endoplasmic reticulum, extracellular	22.56	25.42

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EntrezGene:8068659	UniProt:C5YYE5	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf
InterPro:Cyt_B5_heme-BS	EnsemblPlants:EES17559	ProteinID:EES17559	ProteinID:EES17559.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199
InterPro:IPR036400	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359
PANTHER:PTHR19359:SF66	SMART:SM01117	EnsemblPlantsGene:SORBI_3009G008900	SUPFAM:SSF55856	unigene:Sbi.17475	TMHMM:TMhelix
UniParc:UPI0001A88C97	RefSeq:XP_002439129.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:830756..833487

Molecular Weight (calculated)

14777.6 Da

IEP (calculated)

4.761

GRAVY (calculated)

-0.262

Length

133 amino acids

Sequence
(BLAST)

001: MSKVFTLEDV AKHNTKEDCW LIIGGKVYDV TKFLEDHPGG DDVLLSSTGK DATDDFEDVG HSNTARAMMD EYLVGEIDAS TIPSRTKYVP PKQPHYNQDK
101: TPEFVIKILQ FLVPLAILGL AVAVRMYTKS ESA

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.