CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89024
EES04425

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46650.1	EER89024	AT5G47120.1	19054355
AT2G46650.1	EES04425	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017425_P001	Maize	cytosol	56.07	86.33
TraesCS6B01G284000.1	Wheat	cytosol	49.53	74.65
TraesCS6A01G240700.1	Wheat	cytosol, golgi, mitochondrion	49.07	74.47
TraesCS6D01G222900.1	Wheat	cytosol	49.07	73.94
Os02t0649800-01	Rice	plasma membrane	44.86	69.57
HORVU6Hr1G061420.4	Barley	cytosol	44.39	58.28
EER91363	Sorghum	cytosol	35.51	56.72
KRH68944	Soybean	cytosol	32.71	49.65
KRG97223	Soybean	endoplasmic reticulum	32.71	49.65
Solyc06g053170.2.1	Tomato	cytosol, plastid	8.88	48.72
AT2G46650.1	Thale cress	cytosol	29.44	47.73
KRH47845	Soybean	endoplasmic reticulum	31.31	47.18
EES17559	Sorghum	cytosol	28.97	46.62
EES02143	Sorghum	cytosol	28.97	45.93
KRH06410	Soybean	cytosol	31.31	45.89
CDY41545	Canola	cytosol	27.1	43.28
CDX80035	Canola	cytosol	27.1	43.28
Bra004518.1-P	Field mustard	cytosol	27.1	43.28
CDY61721	Canola	cytosol	26.17	41.79
CDY27310	Canola	cytosol	26.17	41.79
Bra039268.1-P	Field mustard	cytosol	26.17	41.79
EER93435	Sorghum	cytosol	23.83	38.35
EES15848	Sorghum	cytosol	24.3	35.37
OQU80382	Sorghum	extracellular, vacuole	16.36	29.66
EER98759	Sorghum	endoplasmic reticulum, extracellular	15.42	27.97

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	UniProt:A0A1Z5RQ00	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037
GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400	EnsemblPlants:OQU85747	ProteinID:OQU85747	ProteinID:OQU85747.1
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF30
SMART:SM01117	EnsemblPlantsGene:SORBI_3004G299850	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI000B8BA619	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:63883019..63885404

Molecular Weight (calculated)

23226.8 Da

IEP (calculated)

9.205

GRAVY (calculated)

-0.264

Length

214 amino acids

Sequence
(BLAST)

001: MTRVRHRVEP RDLPRRQVNK RETAAPQWLY LVSSSGRCRS RAHGINRPNG GIATAESSSL EARPAARPVS LKVAMAGGKV YSFEEVRKHS DRKDCWLIIA
101: GKVYDVTPFM EEHPGGDEVL LACVGKDATA DFEDIGHTDS AKELMPQYCV GEVDAATIPA KLTHAVVTKD AASRSEKTTT ASAGTWATLL QLALPVLLLA
201: LAFALQNYSR AKAA

Best Arabidopsis Sequence Match ( AT5G53560.1 )
(BLAST)

001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD

Arabidopsis Description

CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.