Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 2
- vacuole 1
- nucleus 1
- plasma membrane 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46650.1 | KRH04210 | AT5G47120.1 | 19054355 |
| AT2G46650.1 | KRH24687 | AT5G47120.1 | 19054355 |
| AT2G46650.1 | KRH28186 | AT5G47120.1 | 19054355 |
| AT2G46650.1 | KRH57502 | AT5G47120.1 | 19054355 |
| AT2G46650.1 | KRH77301 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH06410 | Soybean | cytosol | 95.07 | 92.47 |
| KRH68944 | Soybean | cytosol | 70.42 | 70.92 |
| KRG97223 | Soybean | endoplasmic reticulum | 69.01 | 69.5 |
| KRH64355 | Soybean | endoplasmic reticulum | 55.63 | 56.43 |
| Solyc06g053170.2.1 | Tomato | cytosol, plastid | 14.79 | 53.85 |
| KRG99574 | Soybean | cytosol, endoplasmic reticulum | 47.89 | 50.37 |
| KRH66053 | Soybean | endoplasmic reticulum | 47.18 | 49.63 |
| TraesCS6A01G240700.1 | Wheat | cytosol, golgi, mitochondrion | 47.89 | 48.23 |
| TraesCS6B01G284000.1 | Wheat | cytosol | 47.18 | 47.18 |
| TraesCS6D01G222900.1 | Wheat | cytosol | 47.18 | 47.18 |
| KRG99780 | Soybean | cytosol | 45.77 | 47.1 |
| Zm00001d017425_P001 | Maize | cytosol | 45.07 | 46.04 |
| CDY61721 | Canola | cytosol | 42.96 | 45.52 |
| CDY27310 | Canola | cytosol | 42.96 | 45.52 |
| Bra039268.1-P | Field mustard | cytosol | 42.96 | 45.52 |
| KRH46744 | Soybean | endoplasmic reticulum | 45.07 | 45.07 |
| Os02t0649800-01 | Rice | plasma membrane | 42.96 | 44.2 |
| AT2G46650.1 | Thale cress | cytosol | 40.85 | 43.94 |
| Bra004518.1-P | Field mustard | cytosol | 40.14 | 42.54 |
| CDY41545 | Canola | cytosol | 40.14 | 42.54 |
| KRH53553 | Soybean | cytosol | 35.92 | 42.15 |
| CDX80035 | Canola | cytosol | 39.44 | 41.79 |
| KRH53581 | Soybean | endoplasmic reticulum | 56.34 | 41.03 |
| HORVU6Hr1G061420.4 | Barley | cytosol | 45.07 | 39.26 |
| KRH52065 | Soybean | cytosol | 34.51 | 35.77 |
| KRH61382 | Soybean | cytosol | 34.51 | 35.25 |
| OQU85747 | Sorghum | mitochondrion | 47.18 | 31.31 |
| KRH74256 | Soybean | endoplasmic reticulum, golgi | 23.24 | 27.73 |
| KRH07276 | Soybean | endoplasmic reticulum, plasma membrane | 21.83 | 20.26 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | EMBL:ACUP02004175 | EMBL:ACUP02004176 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf |
| InterPro:Cyt_B5_heme-BS | EnsemblPlantsGene:GLYMA_07G052400 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0020037 | GO:GO:0046872 | UniProt:I1KHS3 | InterPro:IPR001199 | InterPro:IPR036400 |
| EnsemblPlants:KRH47845 | ProteinID:KRH47845 | ProteinID:KRH47845.1 | ProteinID:KRH47846.1 | PFAM:PF00173 | PRINTS:PR00363 |
| ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF43 | SMART:SM01117 | SUPFAM:SSF55856 |
| TMHMM:TMhelix | UniParc:UPI00023C81EB | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:4568568..4575386
Molecular Weight (calculated)
15787.6 Da
IEP (calculated)
5.191
GRAVY (calculated)
-0.354
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKTKTFTF EEVAKHNHRK DCWIIVKGKV YDVTPFLDDH PGGDEVLVTA TEKDATTDFE DIGHSDSATE MMEKYFVGEV DTNTLPAQVT SSSSVRPPTQ
101: APVYNNQSSG FVVKILQYIV PLLILAFAFG LQYYGKKSKS EN
101: APVYNNQSSG FVVKILQYIV PLLILAFAFG LQYYGKKSKS EN
001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
Arabidopsis Description
CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.