Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- cytosol 3
- plasma membrane 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G26340.1 | KRH04210 | AT5G47120.1 | 19054355 |
AT1G26340.1 | KRH24687 | AT5G47120.1 | 19054355 |
AT1G26340.1 | KRH28186 | AT5G47120.1 | 19054355 |
AT1G26340.1 | KRH57502 | AT5G47120.1 | 19054355 |
AT1G26340.1 | KRH77301 | AT5G47120.1 | 19054355 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400072748 | Potato | cytosol | 66.94 | 60.9 |
VIT_01s0011g00210.t01 | Wine grape | cytosol | 66.94 | 60.45 |
Solyc05g012080.2.1 | Tomato | cytosol, plastid | 66.12 | 60.15 |
Bra024721.1-P | Field mustard | cytosol | 66.12 | 59.26 |
CDY16153 | Canola | cytosol | 66.12 | 59.26 |
CDX85016 | Canola | cytosol | 65.29 | 58.52 |
EER93435 | Sorghum | cytosol | 62.81 | 57.14 |
AT1G26340.1 | Thale cress | cytosol | 62.81 | 56.3 |
TraesCS5D01G401800.1 | Wheat | cytosol | 61.98 | 55.56 |
TraesCS5A01G391900.1 | Wheat | cytosol | 61.98 | 55.56 |
TraesCS5B01G396800.1 | Wheat | cytosol | 60.33 | 54.07 |
Zm00001d034048_P003 | Maize | cytosol | 61.16 | 52.86 |
GSMUA_Achr2P13570_001 | Banana | cytosol | 56.2 | 51.13 |
Zm00001d013257_P002 | Maize | plastid | 62.81 | 50.67 |
HORVU5Hr1G095930.3 | Barley | endoplasmic reticulum | 54.55 | 43.71 |
KRH64355 | Soybean | endoplasmic reticulum | 43.8 | 37.86 |
KRG97223 | Soybean | endoplasmic reticulum | 42.98 | 36.88 |
KRG99780 | Soybean | cytosol | 41.32 | 36.23 |
KRH47845 | Soybean | endoplasmic reticulum | 42.15 | 35.92 |
KRH46744 | Soybean | endoplasmic reticulum | 42.15 | 35.92 |
KRH66053 | Soybean | endoplasmic reticulum | 39.67 | 35.56 |
KRH68944 | Soybean | cytosol | 41.32 | 35.46 |
KRG99574 | Soybean | cytosol, endoplasmic reticulum | 38.84 | 34.81 |
KRH06410 | Soybean | cytosol | 41.32 | 34.25 |
KRH61382 | Soybean | cytosol | 33.88 | 29.5 |
KRH52065 | Soybean | cytosol | 32.23 | 28.47 |
KRH53581 | Soybean | endoplasmic reticulum | 43.8 | 27.18 |
KRH74256 | Soybean | endoplasmic reticulum, golgi | 25.62 | 26.05 |
KRH07276 | Soybean | endoplasmic reticulum, plasma membrane | 26.45 | 20.91 |
Protein Annotations
EntrezGene:100500537 | MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | EMBL:ACUP02003475 | EMBL:BT091474 | UniProt:C6T218 |
InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | EnsemblPlantsGene:GLYMA_06G131900 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009536 | GO:GO:0009707 |
GO:GO:0010319 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 | GO:GO:0046872 | InterPro:IPR001199 |
InterPro:IPR036400 | EnsemblPlants:KRH53553 | ProteinID:KRH53553 | ProteinID:KRH53553.1 | PFAM:PF00173 | PRINTS:PR00363 |
ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF25 | SMART:SM01117 | SUPFAM:SSF55856 |
TMHMM:TMhelix | UniParc:UPI0001B14E86 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:10866202..10866892
Molecular Weight (calculated)
13605.0 Da
IEP (calculated)
4.709
GRAVY (calculated)
-0.303
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTLTNFYSI KDLSQHTTKD DCWILVDGKV YDVTQYLDDH PGGDDVILAA TGKDATEEFE DAGHSKSARE HMEQYCIGEL DTSSPISTKE KFIQLTKQYW
101: VVPATVVGIS VVVAFLYLRK K
101: VVPATVVGIS VVVAFLYLRK K
001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT
Arabidopsis Description
CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.