Factsheet for GSMUA_Achr2P13570_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P36970_001
GSMUA_Achr7P07470_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26340.1	GSMUA_Achr6P36970_001	AT5G47120.1	19054355
AT1G26340.1	GSMUA_Achr7P07470_001	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93435	Sorghum	cytosol	63.16	63.16
Solyc05g012080.2.1	Tomato	cytosol, plastid	60.9	60.9
PGSC0003DMT400072748	Potato	cytosol	60.9	60.9
AT1G26340.1	Thale cress	cytosol	60.9	60.0
VIT_01s0011g00210.t01	Wine grape	cytosol	60.15	59.7
TraesCS5A01G391900.1	Wheat	cytosol	60.15	59.26
TraesCS5D01G401800.1	Wheat	cytosol	59.4	58.52
Zm00001d034048_P003	Maize	cytosol	60.9	57.86
CDX85016	Canola	cytosol	58.65	57.78
TraesCS5B01G396800.1	Wheat	cytosol	58.65	57.78
Bra024721.1-P	Field mustard	cytosol	57.89	57.04
CDY16153	Canola	cytosol	57.89	57.04
KRH53553	Soybean	cytosol	51.13	56.2
Zm00001d013257_P002	Maize	plastid	61.65	54.67
GSMUA_Achr3P19410_001	Banana	cytosol	45.11	44.78
HORVU5Hr1G095930.3	Barley	endoplasmic reticulum	49.62	43.71
GSMUA_Achr6P06700_001	Banana	cytosol	43.61	43.28
GSMUA_Achr1P04070_001	Banana	cytosol	42.11	42.11
GSMUA_Achr11P...	Banana	cytosol	39.85	40.15
GSMUA_Achr4P30410_001	Banana	cytosol, extracellular, mitochondrion	43.61	35.58
GSMUA_Achr6P28600_001	Banana	cytosol, golgi, peroxisome	33.83	33.33
GSMUA_Achr3P16820_001	Banana	cytosol	34.59	33.33
GSMUA_Achr4P27140_001	Banana	cytosol	34.59	29.68
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	32.33	28.86
GSMUA_Achr9P05320_001	Banana	endoplasmic reticulum, plasma membrane	24.81	22.6
GSMUA_AchrUn_...	Banana	mitochondrion	37.59	20.41

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009536
GO:GO:0009707	GO:GO:0010319	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr2G13570_001	EnsemblPlants:GSMUA_Achr2P13570_001	EnsemblPlants:GSMUA_Achr2T13570_001	InterPro:IPR001199	InterPro:IPR036400	UniProt:M0S7P8
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF25
SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI000296C57E	:	:

Description

Putative Probable cytochrome b5 isoform 2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G13570_001]

Coordinates

chr2:-:15677076..15680904

Molecular Weight (calculated)

14748.4 Da

IEP (calculated)

4.536

GRAVY (calculated)

-0.212

Length

133 amino acids

Sequence
(BLAST)

001: MATLSKLYSM REAAEHNTRD DCWVVIHGKV YDVTSYLDEH PGGDDVLLSA AGRDSTEDFE DAGHSKSARE LMQDYYIGEL DPDTVIPELE IFRKEKSSAF
101: TTMLTNKTVQ YLAVPAVILG VSVVAGILFS RSK

Best Arabidopsis Sequence Match ( AT1G26340.1 )
(BLAST)

001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT

Arabidopsis Description

CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.