Factsheet for TraesCS5D01G401800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1D01G018500.1
TraesCS6A01G083200.1
TraesCS6B01G113900.1
TraesCS6D01G077000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26340.1	TraesCS1D01G018500.1	AT5G47120.1	19054355
AT1G26340.1	TraesCS6A01G083200.1	AT5G47120.1	19054355
AT1G26340.1	TraesCS6B01G113900.1	AT5G47120.1	19054355
AT1G26340.1	TraesCS6D01G077000.1	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G391900.1	Wheat	cytosol	98.52	98.52
TraesCS5B01G396800.1	Wheat	cytosol	94.81	94.81
EER93435	Sorghum	cytosol	80.74	81.95
Zm00001d034048_P003	Maize	cytosol	80.74	77.86
HORVU5Hr1G095930.3	Barley	endoplasmic reticulum	80.74	72.19
Zm00001d013257_P002	Maize	plastid	80.0	72.0
PGSC0003DMT400072748	Potato	cytosol	62.22	63.16
Solyc05g012080.2.1	Tomato	cytosol, plastid	61.48	62.41
KRH53553	Soybean	cytosol	55.56	61.98
Bra024721.1-P	Field mustard	cytosol	60.74	60.74
CDY16153	Canola	cytosol	60.74	60.74
CDX85016	Canola	cytosol	60.0	60.0
VIT_01s0011g00210.t01	Wine grape	cytosol	59.26	59.7
GSMUA_Achr2P13570_001	Banana	cytosol	58.52	59.4
AT1G26340.1	Thale cress	cytosol	58.52	58.52
TraesCS1D01G184800.1	Wheat	cytosol	37.78	38.06
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	37.04	36.5
TraesCS6D01G222900.1	Wheat	cytosol	36.3	34.51
TraesCS5D01G152500.1	Wheat	golgi	31.85	32.09
TraesCS5D01G190900.1	Wheat	endoplasmic reticulum, extracellular	23.7	27.12
TraesCS7D01G427500.1	Wheat	mitochondrion, plastid	34.07	20.63

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009536
GO:GO:0009707	GO:GO:0010319	GO:GO:0016020	GO:GO:0020037	InterPro:IPR001199	InterPro:IPR036400
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF25
SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5D01G401800	EnsemblPlants:TraesCS5D01G401800.1	SEG:seg

Description

No Description!

Coordinates

chr5D:+:467597897..467598906

Molecular Weight (calculated)

15008.8 Da

IEP (calculated)

4.204

GRAVY (calculated)

-0.183

Length

135 amino acids

Sequence
(BLAST)

001: MPTLTKLYSM KEAALHNTPE DCWIVVDGKI YDVTAYLDDH PGGADVLLAV TGMDGTEEFE DAGHSKDAKE LMKDYFIGEL DLDETPDMPE MEVFRKEQDK
101: DFASKLAAYA VQYWAIPVAA VGISAVVAIL YARRK

Best Arabidopsis Sequence Match ( AT1G26340.1 )
(BLAST)

001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT

Arabidopsis Description

CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.