Factsheet for TraesCS1D01G018500.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum, peroxisome

Predictor Summary:

endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 2
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:	endoplasmic reticulum, peroxisome, plasma membrane
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G181500.1
TraesCS1B01G199300.1
TraesCS1D01G184800.1
TraesCS2A01G502400.1
TraesCS2B01G530500.1
TraesCS2D01G503000.1
TraesCS3A01G417000.2	endoplasmic reticulum
TraesCS3A01G524000.2
TraesCS3D01G412500.1	endoplasmic reticulum
TraesCS3D01G529500.1
TraesCS5A01G138900.1
TraesCS5A01G391900.1
TraesCS5B01G138200.1
TraesCS5B01G396800.1
TraesCS5D01G152500.1
TraesCS5D01G401800.1
TraesCS6A01G240700.1
TraesCS6B01G284000.1
TraesCS6D01G222900.1
TraesCS7A01G489500.1
TraesCS7B01G392600.1
TraesCS7D01G475900.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47120.1	TraesCS5A01G391900.1	AT1G26340.1	19054355
AT5G47120.1	TraesCS5B01G396800.1	AT1G26340.1	19054355
AT5G47120.1	TraesCS5D01G401800.1	AT1G26340.1	19054355
AT5G47120.1	TraesCS7A01G489500.1	AT1G78900.1	23782494
AT5G47120.1	TraesCS7B01G392600.1	AT1G78900.1	23782494
AT5G47120.1	TraesCS7D01G475900.2	AT1G78900.1	23782494
AT5G47120.1	TraesCS2A01G502400.1	AT2G18960.1	23782494
AT5G47120.1	TraesCS2B01G530500.1	AT2G18960.1	23782494
AT5G47120.1	TraesCS2D01G503000.1	AT2G18960.1	23782494
AT5G47120.1	TraesCS3A01G524000.2	AT2G32720.1	19054355
AT5G47120.1	TraesCS3D01G529500.1	AT2G32720.1	19054355
AT5G47120.1	TraesCS5A01G138900.1	AT2G32720.1	19054355
AT5G47120.1	TraesCS5B01G138200.1	AT2G32720.1	19054355
AT5G47120.1	TraesCS5D01G152500.1	AT2G32720.1	19054355
AT5G47120.1	TraesCS6A01G240700.1	AT2G46650.1	19054355
AT5G47120.1	TraesCS6B01G284000.1	AT2G46650.1	19054355
AT5G47120.1	TraesCS6D01G222900.1	AT2G46650.1	19054355
AT5G47120.1	TraesCS3A01G417000.2	AT4G21150.1	23782494
AT5G47120.1	TraesCS3D01G412500.1	AT4G21150.1	23782494
AT5G47120.1	TraesCS3A01G417000.2	AT4G21150.1	23782494
AT5G47120.1	TraesCS3D01G412500.1	AT4G21150.1	23782494
AT5G47120.1	TraesCS3A01G524000.2	AT5G48810.1	19054355
AT5G47120.1	TraesCS3D01G529500.1	AT5G48810.1	19054355
AT5G47120.1	TraesCS5A01G138900.1	AT5G48810.1	19054355
AT5G47120.1	TraesCS5B01G138200.1	AT5G48810.1	19054355
AT5G47120.1	TraesCS5D01G152500.1	AT5G48810.1	19054355
AT5G47120.1	TraesCS1A01G181500.1	AT5G53560.1	19054355
AT5G47120.1	TraesCS1B01G199300.1	AT5G53560.1	19054355
AT5G47120.1	TraesCS1D01G184800.1	AT5G53560.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G077000.1	Wheat	plasma membrane	52.6	61.54
GSMUA_Achr7P07470_001	Banana	plasma membrane	44.29	53.11
EER89024	Sorghum	plasma membrane	44.98	51.79
Zm00001d045618_P001	Maize	plasma membrane	43.25	50.0
VIT_00s1665g00010.t01	Wine grape	golgi, plasma membrane, vacuole	37.02	49.54
KRH77301	Soybean	plasma membrane	41.52	49.18
Bra022106.1-P	Field mustard	plasma membrane	41.18	48.18
AT5G47120.1	Thale cress	plasma membrane	40.83	47.77
CDY25984	Canola	plasma membrane	40.83	47.77
CDY28973	Canola	plasma membrane	40.83	47.77
PGSC0003DMT400067509	Potato	plasma membrane	40.83	47.58
Solyc08g077980.2.1	Tomato	plasma membrane	40.83	47.39
Bra017502.1-P	Field mustard	plasma membrane	40.48	47.37
CDY43441	Canola	plasma membrane	40.48	47.37
CDY40569	Canola	plasma membrane	40.48	47.37
CDY33515	Canola	endoplasmic reticulum, golgi	15.22	46.32
Bra024963.1-P	Field mustard	endoplasmic reticulum, golgi	14.88	45.26
KRH57502	Soybean	plasma membrane	38.41	44.94
KRH28186	Soybean	peroxisome	41.87	44.16
KRH04210	Soybean	plasma membrane	37.37	43.9
AT4G17580.1	Thale cress	plasma membrane	32.87	38.46
AT5G47130.2	Thale cress	endoplasmic reticulum, extracellular, golgi	29.41	37.61
KRH24687	Soybean	extracellular	14.53	35.59
Solyc01g090000.1.1	Tomato	plasma membrane	19.72	23.75

Protein Annotations

EnsemblPlants:TraesCS1D01G018500.1	EnsemblPlantsGene:TraesCS1D01G018500	InterPro:Bax_inhibitor_1-related	PANTHER:PTHR23291	PANTHER:PTHR23291:SF76	PFAM:PF01027
SEG:seg	TMHMM:TMhelix	MapMan:27.2.6	:	:	:

Description

No Description!

Coordinates

chr1D:+:8014215..8016497

Molecular Weight (calculated)

32133.8 Da

IEP (calculated)

6.698

GRAVY (calculated)

0.613

Length

289 amino acids

Sequence
(BLAST)

001: MDAFYSTSSA AAADDWCYDS HNKFREISPA VRSHLKLVYR TVCFALVSSA VGAYLHVALN IGGMLTMLAC MGNIVLFSLT PVYEERKRFV LLMAAAILQG
101: ATICPLIHLP MDFDPRAAII WVLLCATSIL ATGFVGIAIA LGCFSCVTNI AKRSVTSIAK RSEYMYLLVL LSSDMSILLW LQLATSIFVL LTGSFMVEVY
201: SGILIFVGYM VYDMHQIVER AHRGDMDYIG HALTLFTDIT AVLDRIFIIM VRVVICSAPA QERRRQVRGQ EEEEEHVAAQ QCMYVGKEL

Best Arabidopsis Sequence Match ( AT5G47120.1 )
(BLAST)

001: MDAFSSFFDS QPGSRSWSYD SLKNFRQISP AVQNHLKRVY LTLCCALVAS AFGAYLHVLW NIGGILTTIG CIGTMIWLLS CPPYEHQKRL SLLFVSAVLE
101: GASVGPLIKV AIDVDPSILI TAFVGTAIAF VCFSAAAMLA RRREYLYLGG LLSSGLSMLM WLQFASSIFG GSASIFKFEL YFGLLIFVGY MVVDTQEIIE
201: KAHLGDMDYV KHSLTLFTDF VAVFVRILII MLKNSADKEE KKKKRRN

Arabidopsis Description

BI-1Bax inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LD45]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.