Factsheet for TraesCS7B01G392600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 16595579
extracellular: 19786127
plastid: 22160430
golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26228564
nucleus: 26579155

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G475900.2	Wheat	cytosol	90.41	99.67
TraesCS7A01G489500.1	Wheat	plastid	90.41	99.67
Zm00001d015426_P001	Maize	cytosol	69.17	93.24
EES04615	Sorghum	cytosol	85.4	93.24
Os02t0175400-01	Rice	plasma membrane	84.07	91.79
GSMUA_Achr11P...	Banana	cytosol	83.92	91.63
GSMUA_Achr1P10520_001	Banana	plasma membrane	83.92	91.63
GSMUA_Achr9P23040_001	Banana	cytosol	83.63	91.3
KRH46991	Soybean	nucleus	82.45	89.73
Bra008385.1-P	Field mustard	cytosol	77.73	89.63
AT1G78900.1	Thale cress	cytosol	82.3	89.57
Bra003633.1-P	Field mustard	cytosol	82.15	89.41
KRH44667	Soybean	nucleus	82.01	89.25
PGSC0003DMT400074197	Potato	cytosol	82.01	89.25
Solyc12g055800.1.1	Tomato	plastid	82.01	89.25
VIT_09s0054g00890.t01	Wine grape	extracellular	82.01	89.25
PGSC0003DMT400068136	Potato	cytosol	81.71	88.92
Solyc06g063330.2.1	Tomato	cytosol, unclear	81.42	88.6
Bra035074.1-P	Field mustard	cytosol	81.42	88.6
VIT_04s0008g02580.t01	Wine grape	cytosol	81.86	87.96
HORVU7Hr1G109770.1	Barley	cytosol, mitochondrion	87.02	73.29
CDX77882	Canola	mitochondrion	10.77	33.8
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	18.44	25.61
TraesCS6B01G218100.1	Wheat	cytosol	18.29	25.41
TraesCS3B01G186000.1	Wheat	cytosol	15.04	24.4
TraesCS1B01G400300.1	Wheat	cytosol	15.93	24.16
TraesCS3B01G280000.2	Wheat	cytosol	18.44	22.89
TraesCS3B01G298000.1	Wheat	mitochondrion	18.58	22.87

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.10.1140.10	Gene3D:2.40.30.20	Gene3D:2.40.50.100	MapMan:24.1.1.2.1
Gene3D:3.40.50.300	InterPro:ATP-synth_a_Xtn	InterPro:ATP_synth_asu-like_sf	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_V1-cplx_asu	InterPro:ATPase_a/bsu_AS	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015991	GO:GO:0016020
GO:GO:0016787	GO:GO:0033180	GO:GO:0046034	GO:GO:0046961	GO:GO:1902600	InterPro:IPR023366
InterPro:IPR024034	HAMAP:MF_00309	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PFAM:PF16886
ScanProsite:PS00152	PANTHER:PTHR43607	PANTHER:PTHR43607:SF3	SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540
TIGRFAMs:TIGR01042	EnsemblPlantsGene:TraesCS7B01G392600	EnsemblPlants:TraesCS7B01G392600.1	InterPro:V-ATPase_asu	TIGR:cd01134	SEG:seg

Description

No Description!

Coordinates

chr7B:+:659244209..659250402

Molecular Weight (calculated)

74327.5 Da

IEP (calculated)

5.035

GRAVY (calculated)

-0.234

Length

678 amino acids

Sequence
(BLAST)

001: MSRGWKSFVS PFITTSSGLQ AASPAQIDRD SSPPFSPHRC AIPSDAAPAD DPTTPAAMAH GDRMTTFEEG ERESEYGYVR KVSGPVVVAD GMGGAAMYEL
101: VRVGHDSLIG EIIRLEGDSA TIQVYEETAG LTVNDPVLRT KKPLSCELGP GILGNIFDGI QRPLKTIAIK SGDVYIPRGV SVPALDKDQQ WEFQPNKLGV
201: GDNITNGDLY ATVFENTLMK HHIALPPGAM GKISYIAPAG QYSLQDTVLE LEFQGIKKEF TMLHTWPVRT PRPVASKLAA DTPLLTGQRV LDALFPSVLG
301: GTCAIPGAFG CGKTVISQAL SKYSNSDTVV YVGCGERGNE MAEVLMDFPQ LTMTLPDGRE ESVMKRTTLV ANTSNMPVAA REASIYTGIT IAEYFRDMGY
401: NVSMMADSTS RWAEALREIS GRLAEMPADS GYPAYLASRL ASFYERAGKV QCLGSPDRTG SVTIVGAVSP PGGDFSDPVT SATLSIVQVF WGLDKKLAQR
501: KHFPSVNWLI SYSKYSTALE GYYEKFDPGF IDMRTKAREV LQREDDLNEI VQLVGKDALG ESDKITLETA KLLREDYLAQ NAFTPYDKYC PFYKSVWMMR
601: NIIHFNTLAN QAVERAANAD GHKITYAVIK SRMGDLFYRL VSQKFEDPAE GEDALIAKFQ KLYDDLTTGF RNLEDEAR

Best Arabidopsis Sequence Match ( AT1G78900.1 )
(BLAST)

001: MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIARISGDVY IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY IAPAGQYSLK DTVIELEFQG
201: IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL
601: VEKFKKLYDD LNAGFRALED ETR

Arabidopsis Description

VHA-AVHA-A [Source:UniProtKB/TrEMBL;Acc:A0A178W720]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.