CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
vacuole 1
mitochondrion 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 19658398
nucleus: 21132161
nucleus: 24385303
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44667	Soybean	nucleus	99.52	99.52
VIT_09s0054g00890.t01	Wine grape	extracellular	95.51	95.51
Solyc12g055800.1.1	Tomato	plastid	94.54	94.54
Bra003633.1-P	Field mustard	cytosol	94.22	94.22
PGSC0003DMT400074197	Potato	cytosol	94.22	94.22
Solyc06g063330.2.1	Tomato	cytosol, unclear	94.22	94.22
CDY57944	Canola	cytosol	94.22	94.22
CDX79274	Canola	cytosol	94.22	94.22
PGSC0003DMT400068136	Potato	cytosol	94.06	94.06
CDX88489	Canola	cytosol	93.9	93.9
CDX87424	Canola	cytosol	93.9	93.9
Bra008385.1-P	Field mustard	cytosol	88.6	93.88
Bra035074.1-P	Field mustard	cytosol	93.74	93.74
AT1G78900.1	Thale cress	cytosol	93.26	93.26
EES04615	Sorghum	cytosol	92.62	92.91
Zm00001d015426_P001	Maize	cytosol	74.96	92.84
CDY67023	Canola	cytosol	75.44	92.7
Zm00001d053765_P003	Maize	cytosol	91.81	92.11
EER90164	Sorghum	cytosol	91.81	92.11
GSMUA_Achr11P...	Banana	cytosol	91.65	91.95
GSMUA_Achr1P10520_001	Banana	plasma membrane	91.49	91.79
Os06t0662000-01	Rice	nucleus, plasma membrane	91.33	91.77
GSMUA_Achr9P23040_001	Banana	cytosol	91.33	91.63
TraesCS7D01G475900.2	Wheat	cytosol	88.92	90.08
TraesCS7A01G489500.1	Wheat	plastid	88.92	90.08
Os02t0175400-01	Rice	plasma membrane	89.41	89.69
HORVU6Hr1G069640.1	Barley	cytosol, mitochondrion	8.35	88.14
TraesCS7B01G392600.1	Wheat	plastid	89.73	82.45
Zm00001d015427_P001	Maize	extracellular, plastid	14.93	77.5
HORVU7Hr1G109770.1	Barley	cytosol, mitochondrion	83.95	64.97
KRG90658	Soybean	cytosol	20.22	25.82
KRH36093	Soybean	endoplasmic reticulum	20.22	25.82
KRH00994	Soybean	cytosol	20.22	25.77
KRH40221	Soybean	nucleus	20.22	25.77
KRH48739	Soybean	cytosol, mitochondrion	9.79	23.02
KRG90945	Soybean	mitochondrion	19.74	22.0
KRH35827	Soybean	nucleus	19.74	22.0
KRH18721	Soybean	cytosol	6.26	17.65

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.10.1140.10	Gene3D:2.40.30.20	Gene3D:2.40.50.100	MapMan:24.1.1.2.1
Gene3D:3.40.50.300	EMBL:ACUP02004132	InterPro:ATP-synth_a_Xtn	InterPro:ATP_synth_asu-like_sf	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_V1-cplx_asu	InterPro:ATPase_a/bsu_AS	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G002300
GO:GO:0000166	GO:GO:0000325	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005886	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0033180
GO:GO:0046034	GO:GO:0046961	GO:GO:1902600	UniProt:I1KG34	InterPro:IPR023366	InterPro:IPR024034
EnsemblPlants:KRH46991	ProteinID:KRH46991	ProteinID:KRH46991.1	HAMAP:MF_00309	InterPro:P-loop_NTPase	PFAM:PF00006
PFAM:PF02874	PFAM:PF16886	ScanProsite:PS00152	PANTHER:PTHR43607	PANTHER:PTHR43607:SF3	MetaCyc:PWY-7219
SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540	TIGRFAMs:TIGR01042	UniParc:UPI000233867B	InterPro:V-ATPase_asu
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:195908..201233

Molecular Weight (calculated)

68783.3 Da

IEP (calculated)

5.157

GRAVY (calculated)

-0.201

Length

623 amino acids

Sequence
(BLAST)

001: MPAVYGARLT TFEDSEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLMVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIAKRSGDVY IPRGVSVPAL DKDTLWEFQP KKIGEGDLLT GGDLYATVFE NSLMQHHIAL PPDNMGKITY IAPPGQYSLQ DTVLELEFQG
201: VKKKFTMLQT WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITLAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERTGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALETFYEQ FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER GAGSDGQKIS YTLIKHRMGD LFYRLVSQKF EDPAEGEAAL
601: VAKFQKLHED LTNGFRNLED ETR

Best Arabidopsis Sequence Match ( AT1G78900.1 )
(BLAST)

001: MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIARISGDVY IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY IAPAGQYSLK DTVIELEFQG
201: IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL
601: VEKFKKLYDD LNAGFRALED ETR

Arabidopsis Description

VHA-AVHA-A [Source:UniProtKB/TrEMBL;Acc:A0A178W720]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.