CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 8

Predictors

GFP

MS/MS

Papers

cytosol: 18757068
nucleus: 21132161
mitochondrion: 21766870
nucleus: 24385303
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 18757068 doi

NW Oehrle, AD Sarma, JK Waters, DW Emerich

United States Department of Agriculture, Curtis Hall, University of Missouri, Columbia, MO 65211, United States.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35827	Soybean	nucleus	98.03	98.03
CDX69928	Canola	cytosol	72.81	90.65
CDY44784	Canola	cytosol	72.81	90.65
CDY21559	Canola	cytosol	72.81	90.65
Zm00001d038929_P001	Maize	mitochondrion	87.48	88.43
Zm00001d009488_P001	Maize	plasma membrane	87.48	88.43
Os05t0553000-02	Rice	mitochondrion	86.58	87.68
HORVU3Hr1G063590.2	Barley	plasma membrane	85.51	86.75
TraesCS3B01G298000.1	Wheat	mitochondrion	85.33	86.57
TraesCS3A01G264700.1	Wheat	mitochondrion	85.15	86.39
HORVU1Hr1G083840.2	Barley	mitochondrion	85.33	86.1
TraesCS3D01G264800.2	Wheat	golgi	84.79	85.87
TraesCS1B01G400300.1	Wheat	cytosol	68.52	85.68
TraesCS1A01G379000.1	Wheat	mitochondrion	84.44	85.35
Zm00001d043834_P001	Maize	mitochondrion	86.76	85.24
CDX69929	Canola	mitochondrion	83.72	84.48
CDY44783	Canola	mitochondrion	83.54	84.45
AT5G08670.1	Thale cress	mitochondrion	83.9	84.35
AT5G08690.1	Thale cress	mitochondrion	83.9	84.35
CDX78350	Canola	mitochondrion	83.54	84.3
CDY21558	Canola	mitochondrion	83.36	84.27
CDX78351	Canola	mitochondrion	83.72	84.17
Bra009360.1-P	Field mustard	mitochondrion	83.18	84.09
AT5G08680.1	Thale cress	mitochondrion	84.08	84.08
CDX81118	Canola	mitochondrion	83.36	83.96
Bra009363.1-P	Field mustard	mitochondrion	83.36	83.96
Bra006013.1-P	Field mustard	mitochondrion	83.18	83.94
CDX81119	Canola	mitochondrion	83.36	83.81
CDY40737	Canola	mitochondrion	83.18	83.78
CDY40736	Canola	cytosol	83.18	83.78
Bra028648.1-P	Field mustard	mitochondrion	83.01	83.6
Bra028649.1-P	Field mustard	mitochondrion	80.68	79.96
KRH48739	Soybean	cytosol, mitochondrion	37.03	78.11
KRH18721	Soybean	cytosol	27.91	70.59
Bra006014.1-P	Field mustard	mitochondrion	83.54	63.28
KRH36093	Soybean	endoplasmic reticulum	18.07	20.7
KRG90658	Soybean	cytosol	18.07	20.7
KRH40221	Soybean	nucleus	18.07	20.65
KRH00994	Soybean	cytosol	18.07	20.65
KRH44667	Soybean	nucleus	22.0	19.74
KRH46991	Soybean	nucleus	22.0	19.74

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.10.1140.10	EntrezGene:100789705	MapMan:2.4.6.2.2	Gene3D:2.40.10.170
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EMBL:ACUP02012654	InterPro:ATP_synth_F1_beta_su	InterPro:ATP_synth_F1_bsu	InterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_a/bsu_AS	EnsemblPlantsGene:GLYMA_20G123600	GO:GO:0000166
GO:GO:0000275	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0006754	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015986
GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0016887	GO:GO:0045261	GO:GO:0046034
GO:GO:0046933	GO:GO:0099132	GO:GO:1902600	UniProt:I1NFS4	InterPro:IPR024034	EnsemblPlants:KRG90945
ProteinID:KRG90945	ProteinID:KRG90945.1	HAMAP:MF_01347	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874
PFAM:PF11421	PIRSF:PIRSF039072	ScanProsite:PS00152	PANTHER:PTHR15184	PANTHER:PTHR15184:SF44	MetaCyc:PWY-7219
SMART:SM00382	SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540	TIGRFAMs:TIGR01039	UniParc:UPI000233DC37
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:36624323..36628284

Molecular Weight (calculated)

59849.6 Da

IEP (calculated)

6.047

GRAVY (calculated)

-0.082

Length

559 amino acids

Sequence
(BLAST)

001: MASRRFVSSL IRSSLRRSQS KPSISASASR LTSSNRASPH GYLLNRVAEY ATAAAAATAP PSAPPPGKKE VSGGGKITDE FTGKGSIGQV CQVIGAVVDV
101: RFDEGLPPIM TALEVLDHSS RLVLEVAQHL GEGVVRTIAM DATEGVVRGW RVLNTGSPIT VPVGRATLGR IINVIGEPID DKGEINTEHY LPIHREAPAF
201: VEQETAQQIL VTGIKVVDLL APYQRGGKIG LFGGAGVGKT VLIMELINNV AKAHGGFSVF AGVGERTREG NDLYREMIES GVIKLGDKQS ESKCALVYGQ
301: MNEPPGARAR VGLTGLTVAE HFRDAEGQDV LLFVDNIFRF TQANSEVSAL LGRIPSAVGY QPTLSTDLGA LQERITTTKK GSITSVQAIY VPADDLTDPA
401: PATTFAHLDA TTVLSRQISE LGIYPAVDPL DSTSRMLSPL ILGADHYETA RGVQKVLQNY KNLQDIIAIL GMDELSEDDK LTVARARKIQ RFLSQPFHVA
501: EVFTGAPGKY VELKENITSF QGVLDGKYDD LPEQSFYMVG GIEEVIAKAE KIAKESAAS

Best Arabidopsis Sequence Match ( AT5G08680.1 )
(BLAST)

001: MASRRILSSL LRSSSSRSTS KSSLIGSRNP RLLSPGPAHG AAPCGTLLGR VAEYSTSSPA NSAAPSSAPA KDEGKKTYDY GGKGAIGRVC QVIGAIVDVR
101: FEDQEGLPPI MTSLEVQDHP TRLVLEVSHH LGQNVVRTIA MDGTEGLVRG RKVLNTGAPI TVPVGRATLG RIMNVLGEPI DERGEIKTEH YLPIHRDAPA
201: LVDLATGQEI LATGIKVVDL LAPYQRGGKI GLFGGAGVGK TVLIMELINN VAKAHGGFSV FAGVGERTRE GNDLYREMIE SGVIKLGEKQ SESKCALVYG
301: QMNEPPGARA RVGLTGLTVA EYFRDAEGQD VLLFIDNIFR FTQANSEVSA LLGRIPSAVG YQPTLASDLG ALQERITTTK KGSITSVQAI YVPADDLTDP
401: APATTFAHLD ATTVLSRQIS ELGIYPAVDP LDSTSRMLSP HILGEEHYNT ARGVQKVLQN YKNLQDIIAI LGMDELSEDD KLTVARARKI QRFLSQPFHV
501: AEIFTGAPGK YVDLKENINS FQGLLDGKYD DLSEQSFYMV GGIDEVVAKA EKIAKESAA

Arabidopsis Description

ATP synthase subunit beta-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.