CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G151900.1	Wheat	cytosol, mitochondrion, plastid	34.72	70.77
GSMUA_Achr2P07890_001	Banana	cytosol	15.85	57.53
CDY44784	Canola	cytosol	73.58	43.43
CDX69928	Canola	cytosol	73.58	43.43
CDY21559	Canola	cytosol	73.58	43.43
KRH35827	Soybean	nucleus	78.49	37.21
KRG90945	Soybean	mitochondrion	78.11	37.03
Os05t0553000-02	Rice	mitochondrion	75.85	36.41
KXG22502	Sorghum	mitochondrion	75.47	36.17
VIT_17s0000g02900.t01	Wine grape	mitochondrion	75.47	36.1
KXG33146	Sorghum	mitochondrion	75.47	36.1
VIT_01s0011g04490.t01	Wine grape	mitochondrion	75.85	36.09
PGSC0003DMT400078610	Potato	mitochondrion	74.72	35.93
Solyc02g091130.2.1	Tomato	unclear	74.72	35.93
PGSC0003DMT400078507	Potato	cytosol	75.09	35.79
Solyc05g008460.2.1	Tomato	plastid	75.09	35.73
Solyc04g007550.2.1	Tomato	plastid	75.09	35.41
CDY21558	Canola	mitochondrion	73.58	35.26
CDY44783	Canola	mitochondrion	73.58	35.26
PGSC0003DMT400015365	Potato	mitochondrion	74.72	35.23
Bra006013.1-P	Field mustard	mitochondrion	73.58	35.2
CDX78350	Canola	mitochondrion	73.58	35.2
CDX69929	Canola	mitochondrion	73.58	35.2
Bra028648.1-P	Field mustard	mitochondrion	73.58	35.14
Bra009363.1-P	Field mustard	mitochondrion	73.58	35.14
CDY40737	Canola	mitochondrion	73.58	35.14
CDY40736	Canola	cytosol	73.58	35.14
CDX81118	Canola	mitochondrion	73.58	35.14
CDX81119	Canola	mitochondrion	73.58	35.07
CDX78351	Canola	mitochondrion	73.58	35.07
Bra009360.1-P	Field mustard	mitochondrion	72.83	34.9
AT5G08690.1	Thale cress	mitochondrion	73.21	34.89
AT5G08670.1	Thale cress	mitochondrion	73.21	34.89
AT5G08680.1	Thale cress	mitochondrion	73.21	34.7
Bra028649.1-P	Field mustard	mitochondrion	73.21	34.4
Bra006014.1-P	Field mustard	mitochondrion	73.58	26.42
KRH18721	Soybean	cytosol	18.87	22.62
KRH46991	Soybean	nucleus	23.02	9.79
KRH44667	Soybean	nucleus	23.02	9.79
KRH36093	Soybean	endoplasmic reticulum	17.74	9.63
KRG90658	Soybean	cytosol	17.74	9.63
KRH40221	Soybean	nucleus	17.74	9.61
KRH00994	Soybean	cytosol	17.74	9.61

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02004270	InterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	EnsemblPlantsGene:GLYMA_07G108800	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015992	GO:GO:0046034	GO:GO:1902600	UniProt:K7L1B9	EnsemblPlants:KRH48739	ProteinID:KRH48739
ProteinID:KRH48739.1	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PANTHER:PTHR15184	PANTHER:PTHR15184:SF44
MetaCyc:PWY-7219	SUPFAM:SSF50615	SUPFAM:SSF52540	UniParc:UPI0002953EB2	:	:

Description

hypothetical protein

Coordinates

chr7:-:10719698..10721134

Molecular Weight (calculated)

29808.0 Da

IEP (calculated)

6.791

GRAVY (calculated)

-0.025

Length

265 amino acids

Sequence
(BLAST)

001: MTALEVLDHS SRLVLEVAQH LGEGVVRTIV MDASEVQRCM REGNDLYRGG FSVFAGVGER TREGNDLYRE MIEIGVIKLD DKQTENKCAF VYRQMNEPPG
101: ARARVGLTGL TMAKHFRDAK GQDVLLFIDN IFRFTQANSD VSALLGRIPS AVGYQPTLST DLGALQERIT TTKKGSITYV QAIYVPADDL TDPAPAITFA
201: HLDATTVLSR QISELGIYPI VEYLLKVLMI QINKGHQYIR SQAVSYFIYL FRHNFVSFYF QYVCM

Best Arabidopsis Sequence Match ( AT5G08680.1 )
(BLAST)

001: MASRRILSSL LRSSSSRSTS KSSLIGSRNP RLLSPGPAHG AAPCGTLLGR VAEYSTSSPA NSAAPSSAPA KDEGKKTYDY GGKGAIGRVC QVIGAIVDVR
101: FEDQEGLPPI MTSLEVQDHP TRLVLEVSHH LGQNVVRTIA MDGTEGLVRG RKVLNTGAPI TVPVGRATLG RIMNVLGEPI DERGEIKTEH YLPIHRDAPA
201: LVDLATGQEI LATGIKVVDL LAPYQRGGKI GLFGGAGVGK TVLIMELINN VAKAHGGFSV FAGVGERTRE GNDLYREMIE SGVIKLGEKQ SESKCALVYG
301: QMNEPPGARA RVGLTGLTVA EYFRDAEGQD VLLFIDNIFR FTQANSEVSA LLGRIPSAVG YQPTLASDLG ALQERITTTK KGSITSVQAI YVPADDLTDP
401: APATTFAHLD ATTVLSRQIS ELGIYPAVDP LDSTSRMLSP HILGEEHYNT ARGVQKVLQN YKNLQDIIAI LGMDELSEDD KLTVARARKI QRFLSQPFHV
501: AEIFTGAPGK YVDLKENINS FQGLLDGKYD DLSEQSFYMV GGIDEVVAKA EKIAKESAA

Arabidopsis Description

ATP synthase subunit beta-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.