Factsheet for PGSC0003DMT400078507

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008460.2.1	Tomato	plastid	99.28	99.1
PGSC0003DMT400015365	Potato	mitochondrion	95.5	94.48
CDX69928	Canola	cytosol	74.1	91.76
CDY44784	Canola	cytosol	74.1	91.76
CDY21559	Canola	cytosol	74.1	91.76
KXG22502	Sorghum	mitochondrion	89.75	90.24
KXG33146	Sorghum	mitochondrion	89.57	89.89
Zm00001d038929_P001	Maize	mitochondrion	89.39	89.87
Zm00001d009488_P001	Maize	plasma membrane	89.21	89.69
Os05t0553000-02	Rice	mitochondrion	89.03	89.67
TraesCS3B01G298000.1	Wheat	mitochondrion	88.13	88.93
GSMUA_Achr3P20950_001	Banana	mitochondrion	88.67	88.67
PGSC0003DMT400078610	Potato	mitochondrion	87.77	88.57
HORVU3Hr1G063590.2	Barley	plasma membrane	87.77	88.57
TraesCS1B01G400300.1	Wheat	cytosol	71.04	88.37
TraesCS3D01G264800.2	Wheat	golgi	87.59	88.22
HORVU1Hr1G083840.2	Barley	mitochondrion	87.41	87.73
Zm00001d043834_P001	Maize	mitochondrion	89.03	86.99
AT5G08670.1	Thale cress	mitochondrion	83.45	83.45
AT5G08690.1	Thale cress	mitochondrion	83.45	83.45
Bra009363.1-P	Field mustard	mitochondrion	83.27	83.42
CDY44783	Canola	mitochondrion	82.91	83.36
CDY21558	Canola	mitochondrion	82.91	83.36
CDX81119	Canola	mitochondrion	83.27	83.27
CDX78351	Canola	mitochondrion	83.27	83.27
CDX69929	Canola	mitochondrion	82.91	83.21
CDX78350	Canola	mitochondrion	82.73	83.03
AT5G08680.1	Thale cress	mitochondrion	83.45	83.01
CDX81118	Canola	mitochondrion	82.73	82.88
CDY40737	Canola	mitochondrion	82.55	82.7
CDY40736	Canola	cytosol	82.55	82.7
Bra006013.1-P	Field mustard	mitochondrion	82.37	82.67
Bra009360.1-P	Field mustard	mitochondrion	82.19	82.64
Bra028648.1-P	Field mustard	mitochondrion	82.37	82.52
Bra028649.1-P	Field mustard	mitochondrion	80.22	79.08
KRH48739	Soybean	cytosol, mitochondrion	35.79	75.09
TraesCS4A01G151900.1	Wheat	cytosol, mitochondrion, plastid	16.91	72.31
KRH18721	Soybean	cytosol	25.72	64.71
Bra006014.1-P	Field mustard	mitochondrion	83.09	62.6
PGSC0003DMT400002642	Potato	cytosol	41.19	56.13
PGSC0003DMT400074197	Potato	cytosol	23.02	20.55
PGSC0003DMT400068136	Potato	cytosol	22.84	20.39
PGSC0003DMT400068704	Potato	cytosol	17.09	19.83
PGSC0003DMT400008800	Potato	cytosol	17.99	19.08

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.10.10.910	Gene3D:1.10.1140.10	EntrezGene:102584460	EntrezGene:102599894
MapMan:2.4.6.2.2	Gene3D:2.40.10.170	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATP_synth_F1_beta_su	InterPro:ATP_synth_F1_bsu
InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_a/bsu_AS	GO:GO:0000166
GO:GO:0000275	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0006754	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787
GO:GO:0016887	GO:GO:0045261	GO:GO:0046034	GO:GO:0046933	GO:GO:0099132	GO:GO:1902600
InterPro:IPR024034	UniProt:M1D096	HAMAP:MF_01347	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874
PFAM:PF11421	EnsemblPlantsGene:PGSC0003DMG400030560	PGSC:PGSC0003DMG400030560	EnsemblPlants:PGSC0003DMT400078507	PIRSF:PIRSF039072	ScanProsite:PS00152
PANTHER:PTHR15184	PANTHER:PTHR15184:SF44	SMART:SM00382	SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540
TIGRFAMs:TIGR01039	UniParc:UPI0002950177	RefSeq:XP_006344203.1	RefSeq:XP_006360427.1	SEG:seg	:

Description

ATP synthase subunit beta [Source:PGSC_GENE;Acc:PGSC0003DMG400030560]

Coordinates

chr5:+:3808243..3812259

Molecular Weight (calculated)

59572.4 Da

IEP (calculated)

5.722

GRAVY (calculated)

-0.104

Length

556 amino acids

Sequence
(BLAST)

001: MASRRLMASL LRSTAQRGGA ISRSPLANSI PKTTSRASPA GFLLNRAVKY ATSAAPADKS ATPPKSSGNE PSGKITDEFT GAGSVGKVCQ VIGAVVDVRF
101: DEGLPPILTA LEVLDNQIRL VLEVAQHLGE NMVRTIAMDG TEGLVRGQRV LNTGSPITVP VGRSTLGRIM NVIGEPIDER GDITTDHFLP IHREAPAFVE
201: QATEQEILVT GIKVVDLLAP YQRGGKIGLF GGAGVGKTVL IMELINNVAK AHGGFSVFAG VGERTREGND LYREMIESGV IKLGEKQSES KCALVYGQMN
301: EPPGARARVG LTGLTVAEHF RDAEGQDVLL FIDNIFRFTQ ANSEVSALLG RIPSAVGYQP TLATDLGGLQ ERITTTKKGS ITSVQAIYVP ADDLTDPAPA
401: TTFAHLDATT VLSRQISELG IYPAVDPLDS TSRMLSPHIL GEDHYNTARG VQKVLQNYKN LQDIIAILGM DELSEDDKMT VARARKIQRF LSQPFHVAEV
501: FTGAPGKYVD LKESINSFQG VLDGKYDDLS EQSFYMVGGI EEVIAKAEKI AKESAA

Best Arabidopsis Sequence Match ( AT5G08680.1 )
(BLAST)

001: MASRRILSSL LRSSSSRSTS KSSLIGSRNP RLLSPGPAHG AAPCGTLLGR VAEYSTSSPA NSAAPSSAPA KDEGKKTYDY GGKGAIGRVC QVIGAIVDVR
101: FEDQEGLPPI MTSLEVQDHP TRLVLEVSHH LGQNVVRTIA MDGTEGLVRG RKVLNTGAPI TVPVGRATLG RIMNVLGEPI DERGEIKTEH YLPIHRDAPA
201: LVDLATGQEI LATGIKVVDL LAPYQRGGKI GLFGGAGVGK TVLIMELINN VAKAHGGFSV FAGVGERTRE GNDLYREMIE SGVIKLGEKQ SESKCALVYG
301: QMNEPPGARA RVGLTGLTVA EYFRDAEGQD VLLFIDNIFR FTQANSEVSA LLGRIPSAVG YQPTLASDLG ALQERITTTK KGSITSVQAI YVPADDLTDP
401: APATTFAHLD ATTVLSRQIS ELGIYPAVDP LDSTSRMLSP HILGEEHYNT ARGVQKVLQN YKNLQDIIAI LGMDELSEDD KLTVARARKI QRFLSQPFHV
501: AEIFTGAPGK YVDLKENINS FQGLLDGKYD DLSEQSFYMV GGIDEVVAKA EKIAKESAA

Arabidopsis Description

ATP synthase subunit beta-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.