Factsheet for PGSC0003DMT400068704

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	99.79	99.79
CDY01384	Canola	cytosol	87.27	96.31
VIT_03s0038g02760.t01	Wine grape	cytosol	97.91	96.11
GSMUA_Achr2P16710_001	Banana	cytosol	97.49	95.7
GSMUA_Achr7P09090_001	Banana	cytosol, plasma membrane	97.29	95.49
KXG20226	Sorghum	cytosol	96.87	95.28
Zm00001d036961_P004	Maize	plasma membrane, plastid	96.87	95.28
TraesCS3D01G250900.1	Wheat	cytosol	96.87	95.08
Os01t0711000-01	Rice	plastid	96.87	95.08
CDX73218	Canola	cytosol	95.82	95.03
TraesCS3A01G250500.1	Wheat	extracellular	96.66	94.88
KRG90658	Soybean	cytosol	96.66	94.88
Bra025804.1-P	Field mustard	cytosol	79.96	94.8
KRH36093	Soybean	endoplasmic reticulum	96.45	94.67
CDY54328	Canola	cytosol	96.03	94.65
KRH00994	Soybean	cytosol	96.45	94.48
TraesCS6A01G186300.1	Wheat	cytosol	96.24	94.47
TraesCS6B01G218100.1	Wheat	cytosol	96.24	94.47
TraesCS6D01G173400.1	Wheat	cytosol, nucleus, plastid, unclear	96.24	94.47
TraesCS7A01G362000.1	Wheat	cytosol	96.24	94.47
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	96.24	94.47
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	96.24	94.47
TraesCS7D01G361000.1	Wheat	cytosol	96.24	94.47
CDY51327	Canola	cytosol	95.82	94.44
AT4G38510.5	Thale cress	cytosol	97.29	94.33
KRH40221	Soybean	nucleus	96.24	94.27
CDX87646	Canola	cytosol	96.03	94.26
Bra015797.1-P	Field mustard	cytosol	96.03	94.26
CDY31899	Canola	cytosol	95.62	94.24
CDX96645	Canola	cytosol	95.62	94.24
OQU84653	Sorghum	cytosol	95.82	94.06
CDY29363	Canola	cytosol	95.2	93.83
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	97.91	93.24
Bra012223.1-P	Field mustard	endoplasmic reticulum	91.44	92.99
Zm00001d046336_P001	Maize	cytosol	96.66	92.97
PGSC0003DMT400008800	Potato	cytosol	98.33	89.89
HORVU3Hr1G067000.1	Barley	cytosol	48.23	89.53
HORVU7Hr1G087190.1	Barley	plastid	96.45	87.67
HORVU3Hr1G067040.5	Barley	cytosol, plastid	96.87	87.55
HORVU6Hr1G039890.3	Barley	mitochondrion	96.45	84.93
TraesCS3B01G280000.2	Wheat	cytosol	95.2	83.52
PGSC0003DMT400074197	Potato	cytosol	25.68	19.74
PGSC0003DMT400068136	Potato	cytosol	25.05	19.26
PGSC0003DMT400078610	Potato	mitochondrion	20.46	17.79
PGSC0003DMT400078507	Potato	cytosol	19.83	17.09
PGSC0003DMT400015365	Potato	mitochondrion	19.62	16.73
PGSC0003DMT400002642	Potato	cytosol	13.99	16.42

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0033180	GO:GO:0046034	GO:GO:1902600
UniProt:M1CJD7	HAMAP:MF_00310	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	EnsemblPlantsGene:PGSC0003DMG400026716
PGSC:PGSC0003DMG400026716	EnsemblPlants:PGSC0003DMT400068704	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6
SUPFAM:SSF52540	TIGRFAMs:TIGR01040	UniParc:UPI000296ECAF	InterPro:V-ATPase_su_B/beta	:	:

Description

ATP synthase subunit beta vacuolar [Source:PGSC_GENE;Acc:PGSC0003DMG400026716]

Coordinates

chr10:+:47484661..47493838

Molecular Weight (calculated)

53387.8 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.273

Length

479 amino acids

Sequence
(BLAST)

001: MEEGTLEVGM EYRTVSGVAG PLVILEKVKG PKYQEIVNIR LGDGTTRRGQ VLEVDGEKAV VQVFEGTSGI DNKYTTVQFT GEVLKTPVSL DMLGRIFNGS
101: GKPIDNGPPI LPEAYRDISG SSINPSERTY PEEMIQTGIS TIDVMNSIAR GQKIPLFSAA GLPHNEIAAQ ICRQAGLVKR LEKSENLLED SEADNFAIVF
201: AAMGVNMETA QFFKRDFEEN GSMERVTLFL NLANDPTIER IITPRIALTT AEYLAYECGK HVLVILTDMS SYADALREVS AAREEVPGRR GYPGYMYTDL
301: ATIYERAGRI EGRTGSITQI PILTMPNDDI THPTPDLTGY ITEGQIYIDR QLHNRQIYPP INVLPSLSRL MKSAIGEGMT RRDHADVSNQ LYANYAIGKD
401: VQAMKAVVGE EALSSEDLLY LEFLDKFERK FVSQGAYDTR NIFQSLDLAW TLLRIFPREL LHRIPAKTLD QYYSRDASN

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.