CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01384	Canola	cytosol	89.09	99.77
CDY51327	Canola	cytosol	99.38	99.38
CDY54328	Canola	cytosol	99.38	99.38
CDY31899	Canola	cytosol	99.38	99.38
CDY29363	Canola	cytosol	98.77	98.77
AT1G20260.1	Thale cress	cytosol	97.94	97.74
CDX87646	Canola	cytosol	97.12	96.72
CDX73218	Canola	cytosol	96.09	96.69
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	94.24	95.62
PGSC0003DMT400068704	Potato	cytosol	94.24	95.62
Solyc01g111760.2.1	Tomato	plastid	93.83	95.2
TraesCS6D01G173400.1	Wheat	cytosol, nucleus, plastid, unclear	94.44	94.06
TraesCS6B01G218100.1	Wheat	cytosol	94.44	94.06
TraesCS6A01G186300.1	Wheat	cytosol	94.44	94.06
Zm00001d036961_P004	Maize	plasma membrane, plastid	94.24	94.05
KXG20226	Sorghum	cytosol	94.24	94.05
TraesCS7D01G361000.1	Wheat	cytosol	94.24	93.85
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	94.24	93.85
TraesCS7A01G362000.1	Wheat	cytosol	94.24	93.85
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	94.24	93.85
VIT_03s0038g02760.t01	Wine grape	cytosol	94.03	93.65
Zm00001d046336_P001	Maize	cytosol	94.44	92.17
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	94.65	91.45
HORVU7Hr1G087190.1	Barley	plastid	94.44	87.1
PGSC0003DMT400008800	Potato	cytosol	93.62	86.83
HORVU6Hr1G039890.3	Barley	mitochondrion	94.65	84.56
CDX99333	Canola	mitochondrion	18.31	39.21
CDX69928	Canola	cytosol	19.55	21.16
CDY44784	Canola	cytosol	19.55	21.16
CDY21559	Canola	cytosol	19.55	21.16
CDY67023	Canola	cytosol	21.81	20.91
CDX87424	Canola	cytosol	25.51	19.9
CDX88489	Canola	cytosol	25.51	19.9
CDY57944	Canola	cytosol	25.31	19.74
CDX79274	Canola	cytosol	25.31	19.74
CDY44783	Canola	mitochondrion	20.99	18.44
CDY21558	Canola	mitochondrion	20.99	18.44
CDX69929	Canola	mitochondrion	20.99	18.41
CDX78350	Canola	mitochondrion	20.99	18.41
CDX81118	Canola	mitochondrion	20.99	18.38
CDY40736	Canola	cytosol	20.99	18.38
CDY40737	Canola	mitochondrion	20.99	18.38
CDX81119	Canola	mitochondrion	20.99	18.35
CDX78351	Canola	mitochondrion	20.99	18.35
CDY17918	Canola	cytosol	10.7	16.35
CDY17919	Canola	cytosol	4.94	16.33
CDY21198	Canola	cytosol	7.61	16.02
CDX99946	Canola	plastid	19.34	15.64
CDX98579	Canola	plastid	19.34	15.64
CDY38701	Canola	plastid	19.34	15.64
CDX77882	Canola	mitochondrion	3.91	8.8

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	GO:A0A078E3V1	InterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	EnsemblPlants:CDX96645	ProteinID:CDX96645	ProteinID:CDX96645.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015991	GO:GO:0016020
GO:GO:0033180	GO:GO:0046034	GO:GO:1902600	EnsemblPlantsGene:GSBRNA2T00102849001	HAMAP:MF_00310	InterPro:P-loop_NTPase
PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6
MetaCyc:PWY-7219	SUPFAM:SSF52540	TIGRFAMs:TIGR01040	UniParc:UPI0004EE2857	InterPro:V-ATPase_su_B/beta	SEG:seg

Description

BnaA08g21880D

Coordinates

chrLK031895:-:365761..369413

Molecular Weight (calculated)

54141.9 Da

IEP (calculated)

4.774

GRAVY (calculated)

-0.237

Length

486 amino acids

Sequence
(BLAST)

001: MVAAGIDMDE GALEIGMEYR TVSGVAGPLV ILEKVKGPKY QEIVNIRLGD GSMRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSQDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TENLIEDHGE
201: DNFAIVFAAM GVNMETAQFF KRDFEENGSM ERVTLFLNLA NDPTIERIIT PRITLTTAEY LAYECGKHVL VILTDMSSYA DALREVSAAR EEVPGRRGYP
301: GYMYTDLATI YERAGRIEGR KGSITQIPIL TMPNDDITHP TPDLTGYITE GQIYIDRQLH NRQIYPPINV LPSLSRLMKS AIGEGMTRRD HSDVSNQLYA
401: NYAIGKDVQA MKAVVGEEAL SSEDLLYLEF LDKFERKFVM QGAYDTRNIF QSLDLAWTLL RIFPRELLHR IPAKTLDQFY SRDSTS

Best Arabidopsis Sequence Match ( AT1G20260.1 )
(BLAST)

001: MVETSIDMEE GTLEIGMEYR TVSGVAGPLV ILDKVKGPKY QEIVNIRLGD GSTRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSLDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TENLIQEDHG
201: EDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RKGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRK DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV MQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQF YSRDSTS

Arabidopsis Description

VHA-B3VAB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WCF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.